Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31052
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   129   2e-30
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   0.44 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.1  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.1  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.4  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    28   7.1  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    28   7.1  
AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid deplete...    27   9.4  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  129 bits (312), Expect = 2e-30
 Identities = 61/96 (63%), Positives = 71/96 (73%)
 Frame = +3

Query: 3   GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 182
           GPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  K
Sbjct: 3   GPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKK 62

Query: 183 IVKQRLIKVDGKVRTDPTYPAGFMMLSQLRRLMNCF 290
           I+ QR+++VDGKVRT   +P GFM +  + R    F
Sbjct: 63  ILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  119 bits (287), Expect = 2e-27
 Identities = 55/91 (60%), Positives = 66/91 (72%)
 Frame = +2

Query: 254 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 433
           DVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTI
Sbjct: 87  DVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTI 146

Query: 434 RYPDPLIKVNDSIQLDIATTKIMDFSSLSPG 526
           RYPDP +KVND+I  +I+T KI D     PG
Sbjct: 147 RYPDPHVKVNDTIVFNISTQKITDSVKFEPG 177



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/58 (68%), Positives = 49/58 (84%)
 Frame = +1

Query: 508 LKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 681
           +KFE GNL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGK
Sbjct: 172 VKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGK 229


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect(2) = 0.44
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 540 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 641
           HG    G+ G H     T   L H  H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676



 Score = 25.0 bits (52), Expect(2) = 9.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 570 HHRVPRETSRLLRHCAHQGLHGTH 641
           HH  P        H  H G HG+H
Sbjct: 474 HHHAPAHHGHHGEHGTHHGHHGSH 497



 Score = 23.0 bits (47), Expect(2) = 0.44
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 615 AHQGLHGTHLRHEVEQRVHN 674
           AH G HG H  H      H+
Sbjct: 684 AHHGHHGAHHEHGAHHGAHH 703



 Score = 20.6 bits (41), Expect(2) = 9.9
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 615 AHQGLHGTHLRHEVEQRVHN 674
           AH G HG H  H      H+
Sbjct: 537 AHHGHHGEHGTHHGHHGSHH 556


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 311 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 442
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 528 LVYDHGRP*LGACGHHRVPRETSRLLRH 611
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 528 LVYDHGRP*LGACGHHRVPRETSRLLRH 611
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 468  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 304
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 269 QLRQHHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 123
           Q + +H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 207 QQQNYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 269 QLRQHHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 123
           Q + +H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 229 QQQNYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277


>AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid depleted
           protein 5 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 377 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFSSL 517
           ++TG  N+P   +HD + +   D L K +    + +++ + MD   +
Sbjct: 20  LSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMDIGGV 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,609,193
Number of Sequences: 27780
Number of extensions: 398889
Number of successful extensions: 1195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)