BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV31051 (765 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 1.3 SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po... 27 2.2 SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.9 SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 27 3.9 SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 27 3.9 SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 26 6.8 SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 26 6.8 SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 26 6.8 SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 6.8 SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 6.8 SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.0 SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 9.0 >SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 598 Score = 28.3 bits (60), Expect = 1.3 Identities = 20/47 (42%), Positives = 26/47 (55%) Frame = -1 Query: 501 STGSRMRRSPIASHTTSNSPTPASFVTTLKLIGVWATIFPVGKPETI 361 STGS + P A+ TTSN+P PAS +T G F GKP ++ Sbjct: 168 STGSLFGK-PAATGTTSNAP-PASSTSTTPATGSGG--FSFGKPASL 210 >SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 220 Score = 27.5 bits (58), Expect = 2.2 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +1 Query: 637 SSAAKCSGTGL---AHAHVGKEAAFTIHCAEDTSPTVEVERLSNDK 765 SS K SGT + A+ HV K+ + HC E+T + L+ D+ Sbjct: 67 SSTPKPSGTVVNIEAYGHVYKQTLWNSHCVENTPGCEFPDSLNGDR 112 >SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 490 Score = 27.1 bits (57), Expect = 2.9 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Frame = -3 Query: 478 LTHRFTHHV*FTNTRVL---CHNTEIDWRLGNN 389 LT FT F R L CH IDW LGNN Sbjct: 45 LTASFTGLKKFPTERQLPLECHFNHIDWDLGNN 77 >SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 732 Score = 26.6 bits (56), Expect = 3.9 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 350 PNRVIVSGLPTGNIVAQTPINFSVVTKD 433 P + +S LPT N A TP N S++ ++ Sbjct: 343 PGTIPISVLPTSNFSAATPANPSLINQN 370 >SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 107 Score = 26.6 bits (56), Expect = 3.9 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = +3 Query: 459 CVKRWVSVASDCPLTSEGW 515 C+ RW++ + CPL + W Sbjct: 82 CISRWLNTRNVCPLDNREW 100 >SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 679 Score = 25.8 bits (54), Expect = 6.8 Identities = 11/37 (29%), Positives = 18/37 (48%) Frame = -1 Query: 312 GLDRCKTSIVLCPTSLIVNLLATSQTWFDNILRAVLE 202 GLD+ +TS+ P + V + W DN+ + E Sbjct: 492 GLDKPETSVGSLPKNATVQSKRLCERWLDNLFMVLYE 528 >SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 407 Score = 25.8 bits (54), Expect = 6.8 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = -1 Query: 501 STGSRMRRSPIASHTTSNSPTPASFVTTLKLIGVWATIFPVGKPETITLFG 349 ++G + + ++ TSNS T S + ++ W I GKP+ + G Sbjct: 11 TSGGEVIQKKLSDTQTSNSSTTGSQNARVPVLENWLNIVLRGKPQNVESSG 61 >SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosaccharomyces pombe|chr 3|||Manual Length = 574 Score = 25.8 bits (54), Expect = 6.8 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Frame = +2 Query: 173 IRRGRLWTWLSSTARKMLSNQVWLVASKFTINEVGQSTIEVLHLSKPVSGSP-YTCESFD 349 IR G + +++ ++ +V + S+ T I + H++ S P + ++F Sbjct: 353 IRTGNITGTSATSLEELFKERVTPILSQLTC-----PCILIPHINDAASDHPAWPQDAF- 406 Query: 350 PNRVIVSGLPTGNIVAQTPINFSVVTKDAGVGELDVVCEAMGERRIRLP 496 NRV + GLP+ P FS+ GV D++ E RLP Sbjct: 407 -NRVAL-GLPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREELFRLP 453 >SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr 3|||Manual Length = 687 Score = 25.8 bits (54), Expect = 6.8 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 Query: 431 DAGVGELDVVCEAMGERRIRLPVDIRRMDTHTEC 532 DA V D++ EA GE+R R D ++ +T C Sbjct: 74 DANV-TFDIIVEAYGEQRARFTFDPCEINLNTVC 106 >SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual Length = 1097 Score = 25.8 bits (54), Expect = 6.8 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%) Frame = +2 Query: 353 NRVIVSGLPTGNIVAQTPIN------FSVVTKDAGVGELDVVCE 466 N +V+G+ I+A P F VV KD V + DVVCE Sbjct: 1035 NPKVVTGVFNPRILANRPYRTNIDYPFKVVDKDTVVLDADVVCE 1078 >SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccharomyces pombe|chr 2|||Manual Length = 605 Score = 25.4 bits (53), Expect = 9.0 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = +1 Query: 595 LGSPISLGVLSGRSSSAAKCSGTGLAHAHVGKEAAFTIHCAEDTSPTVEV 744 +G+P SL LS SSS SG+ L + ++ + + ++ +SP+ E+ Sbjct: 27 VGTPGSLLSLSSSSSSNTDSSGSSLGSLSLNSNSSGSDNDSKVSSPSREI 76 >SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe|chr 1|||Manual Length = 727 Score = 25.4 bits (53), Expect = 9.0 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -2 Query: 761 SFDNLSTSTVGDVSSAQCIVKAASLPT*ACASPV 660 S++ L + GDV+SA CI+K + + A+P+ Sbjct: 63 SWEALKKAIDGDVTSAVCILKYNTYQIYSAAAPI 96 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,596,816 Number of Sequences: 5004 Number of extensions: 82544 Number of successful extensions: 223 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 223 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 367316502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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