Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31051
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   1.3  
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    27   2.2  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   3.9  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    27   3.9  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   6.8  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   6.8  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   6.8  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   6.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   6.8  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.0  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   9.0  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -1

Query: 501 STGSRMRRSPIASHTTSNSPTPASFVTTLKLIGVWATIFPVGKPETI 361
           STGS   + P A+ TTSN+P PAS  +T    G     F  GKP ++
Sbjct: 168 STGSLFGK-PAATGTTSNAP-PASSTSTTPATGSGG--FSFGKPASL 210


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 637 SSAAKCSGTGL---AHAHVGKEAAFTIHCAEDTSPTVEVERLSNDK 765
           SS  K SGT +   A+ HV K+  +  HC E+T      + L+ D+
Sbjct: 67  SSTPKPSGTVVNIEAYGHVYKQTLWNSHCVENTPGCEFPDSLNGDR 112


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = -3

Query: 478 LTHRFTHHV*FTNTRVL---CHNTEIDWRLGNN 389
           LT  FT    F   R L   CH   IDW LGNN
Sbjct: 45  LTASFTGLKKFPTERQLPLECHFNHIDWDLGNN 77


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 350 PNRVIVSGLPTGNIVAQTPINFSVVTKD 433
           P  + +S LPT N  A TP N S++ ++
Sbjct: 343 PGTIPISVLPTSNFSAATPANPSLINQN 370


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 459 CVKRWVSVASDCPLTSEGW 515
           C+ RW++  + CPL +  W
Sbjct: 82  CISRWLNTRNVCPLDNREW 100


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 312 GLDRCKTSIVLCPTSLIVNLLATSQTWFDNILRAVLE 202
           GLD+ +TS+   P +  V      + W DN+   + E
Sbjct: 492 GLDKPETSVGSLPKNATVQSKRLCERWLDNLFMVLYE 528


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -1

Query: 501 STGSRMRRSPIASHTTSNSPTPASFVTTLKLIGVWATIFPVGKPETITLFG 349
           ++G  + +  ++   TSNS T  S    + ++  W  I   GKP+ +   G
Sbjct: 11  TSGGEVIQKKLSDTQTSNSSTTGSQNARVPVLENWLNIVLRGKPQNVESSG 61


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +2

Query: 173 IRRGRLWTWLSSTARKMLSNQVWLVASKFTINEVGQSTIEVLHLSKPVSGSP-YTCESFD 349
           IR G +    +++  ++   +V  + S+ T        I + H++   S  P +  ++F 
Sbjct: 353 IRTGNITGTSATSLEELFKERVTPILSQLTC-----PCILIPHINDAASDHPAWPQDAF- 406

Query: 350 PNRVIVSGLPTGNIVAQTPINFSVVTKDAGVGELDVVCEAMGERRIRLP 496
            NRV + GLP+       P  FS+     GV   D++     E   RLP
Sbjct: 407 -NRVAL-GLPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREELFRLP 453


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 431 DAGVGELDVVCEAMGERRIRLPVDIRRMDTHTEC 532
           DA V   D++ EA GE+R R   D   ++ +T C
Sbjct: 74  DANV-TFDIIVEAYGEQRARFTFDPCEINLNTVC 106


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +2

Query: 353  NRVIVSGLPTGNIVAQTPIN------FSVVTKDAGVGELDVVCE 466
            N  +V+G+    I+A  P        F VV KD  V + DVVCE
Sbjct: 1035 NPKVVTGVFNPRILANRPYRTNIDYPFKVVDKDTVVLDADVVCE 1078


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 595 LGSPISLGVLSGRSSSAAKCSGTGLAHAHVGKEAAFTIHCAEDTSPTVEV 744
           +G+P SL  LS  SSS    SG+ L    +   ++ + + ++ +SP+ E+
Sbjct: 27  VGTPGSLLSLSSSSSSNTDSSGSSLGSLSLNSNSSGSDNDSKVSSPSREI 76


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 761 SFDNLSTSTVGDVSSAQCIVKAASLPT*ACASPV 660
           S++ L  +  GDV+SA CI+K  +    + A+P+
Sbjct: 63  SWEALKKAIDGDVTSAVCILKYNTYQIYSAAAPI 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,596,816
Number of Sequences: 5004
Number of extensions: 82544
Number of successful extensions: 223
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)