Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31051
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103... 31 1.0
04_04_0549 - 26179668-26181176 30 1.8
11_06_0365 - 22742886-22744223 29 3.1
11_06_0362 - 22723104-22724441 29 3.1
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94... 29 5.4
11_06_0056 + 19677556-19677610,19677764-19677984 29 5.4
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 29 5.4
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254... 28 7.1
03_03_0232 + 15644934-15645224,15645696-15645791 28 7.1
03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395 28 7.1
02_05_0239 + 27101440-27101904 28 7.1
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 28 9.4
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 28 9.4
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 9.4
>07_03_0908 +
22507565-22507810,22507925-22508872,22509314-22510337,
22510425-22510477
Length = 756
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 106 KPRPEAATSCPWCGGCTSTSNGSLSI 29
KPRPE T CP C TSNG +
Sbjct: 295 KPRPETRTGCPACMVIRLTSNGKYHV 320
>04_04_0549 - 26179668-26181176
Length = 502
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 281 STIEVLHLSKPVSGSPYTCESFDPNRVIVSGLPTGNIVAQTPINFSVVTKDAGVGE 448
ST+E + P++ P+T E F ++IV L G + T ++T G GE
Sbjct: 387 STLESVAAGVPMAAWPFTAEQFVNEKLIVDVLGIGVSIGVTKPTGGMLTAGGGGGE 442
>11_06_0365 - 22742886-22744223
Length = 445
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 329 YTCESFDPNRVIVSGLPTGNIVAQTPINFSVVTKDAGVG 445
Y CE++ PN +V TG + + P VVT+ + VG
Sbjct: 62 YACEAYSPNNAVVHCPLTGESI-RVPFPLGVVTEHSVVG 99
>11_06_0362 - 22723104-22724441
Length = 445
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 329 YTCESFDPNRVIVSGLPTGNIVAQTPINFSVVTKDAGVG 445
Y CE++ PN +V TG + + P VVT+ + VG
Sbjct: 62 YACEAYSPNNAVVHCPLTGESI-RVPFPLGVVTEHSVVG 99
>12_01_0125 -
946480-947242,947283-947374,947462-947680,948059-949156
Length = 723
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +1
Query: 547 VPSHYRIYITYGGAPILGSPISLGVLSGRSSSAAKCSGTGLAHAHVG 687
VPS YR GG GSP G + S S+ + SG G + VG
Sbjct: 267 VPSRYRQPSPVGGRRGAGSPAPGGRRASLSPSSRRLSGEGSSKKKVG 313
>11_06_0056 + 19677556-19677610,19677764-19677984
Length = 91
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 619 VLSGRSSSAAKCSGTGLAHAHVGKEAAFTIHCAEDTSPTVEV 744
VLS + AA+ + G A V K+ F +HC +D P V++
Sbjct: 15 VLSSDMTMAARMTNYGRLDAPVCKKITFKVHC-DDIKPCVQL 55
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = -1
Query: 543 GTQSHSVCVSILRMSTGSRMRRSPIASHTTSNSPTPASFVTTLKLIGVWATIFPVGKPET 364
G S+ VS+ S G+ + + + SPT S + G++ + P
Sbjct: 301 GIISYGRTVSVYDFSEGAAVSADVLPGN---KSPTHESLKAIIYGTGIYLSPVHASLPVA 357
Query: 363 ITLFGSKDSHVYGLPDTGLDRC 298
T+F S + LP+ DRC
Sbjct: 358 HTIFSSLRPYQLSLPEVSRDRC 379
>09_06_0111 -
20924838-20924969,20925147-20925290,20925391-20925453,
20925993-20926116,20926779-20927005,20927088-20927255,
20927348-20927498,20927567-20927889
Length = 443
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 534 SHSVCVSILRMSTGSRMRRSPIASHTTSNSPTPASFVTTLKLIGVWATIFPV 379
S + C LR S +R +AS + P PAS V+T+ + + +P+
Sbjct: 42 SRASCAPPLRASAARTLRSRVVASAAPAMQPPPASRVSTVVDVDLGDRSYPI 93
>03_03_0232 + 15644934-15645224,15645696-15645791
Length = 128
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +1
Query: 502 HPKDGHTHRVRLRPTVPSHYRIYITYGGAPILGSPISLGVLSGRSSSAAKCSGTGLAHAH 681
HP DGH L T+PS +T GG+P S V +S S ++ +G + H
Sbjct: 47 HP-DGH-----LEVTLPSECNFAVTVGGSPYKFRFDSKFVGLIKSGSISEINGVRVQVDH 100
Query: 682 VGKEAAFTIHCAEDTSP 732
G + F + + + P
Sbjct: 101 AGNQLTFKVGTSSISFP 117
>03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395
Length = 704
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +3
Query: 54 DVHPPHHGQEVAASGLGLYQAQVNKVASFSIDTLGRPAREFDVVVSGP 197
+VHPP + +++ +S + L +KVA F + +G + + + + P
Sbjct: 454 EVHPPIYHRDIKSSNILLDHEYNSKVADFGLSRMGMTSVDSSHISTAP 501
>02_05_0239 + 27101440-27101904
Length = 154
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 459 CVKRWVSVASDCPLTSEGWTHTQS 530
CV RW++++ CP+ + W TQS
Sbjct: 118 CVDRWLTISPRCPVCN-AWVTTQS 140
>07_01_0593 +
4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 115 AWYKPRPEAATSCPWCGGCTSTSNGSLSI 29
AWYK R PWC T+ S+SI
Sbjct: 488 AWYKLRQPTKQYAPWCEPVLKTARLSVSI 516
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -1
Query: 465 SHTTSNSPTPASFVTTLKLIGVWATIFPVGKPETITLFGSKDSHVYGLPDTGLDRCKTSI 286
S + +N PTP T K G T F VG+ T T H +D S
Sbjct: 152 SSSVNNGPTPVYPTGTEKNSG--ETWFEVGRSRTYTPTADDIGHALRFECVAVDSETRSS 209
Query: 285 VLCPTSLIVNLLATSQT 235
V PTS++ + + + T
Sbjct: 210 VGAPTSIMTSRVIPAPT 226
>01_05_0117 -
18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 489 DCPLTSEGWTHTQSAIASHCTLTLQDLHHLW 581
DCP T + WT +S + C+ + L + W
Sbjct: 133 DCPFTQQVWTRIRSRLDLPCSTPSEGLINWW 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,038,411
Number of Sequences: 37544
Number of extensions: 608762
Number of successful extensions: 2008
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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