Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31051
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 7e-07
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 30 1.8
SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07) 30 1.8
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 29 5.4
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.2
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 28 7.2
SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 SKFTINEVGQSTIEVLHLSKPVSGSPYTCESFDPNRVIVSGLPT-GNIVAQTPINFSVVT 427
++FT EVG+ I V+ + P+ G+P+ + DP++VIV+ + + V P+ F V T
Sbjct: 378 ARFTPREVGEHRITVMVGATPLPGTPFVTKVGDPSKVIVTPAESMRSPVLGEPVKFEVDT 437
Query: 428 KDAGVGELDVVCEAMGERRIRLPVDIR 508
AG+GEL + C+ +PVD+R
Sbjct: 438 TSAGLGELAIKCKGPTG---GIPVDVR 461
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 508 KDGHTHRVRLRPTVPSHYRIYITYGGAPILGSPISLGV 621
+DG+ H +R P Y + + YGG + SP+ L V
Sbjct: 551 RDGN-HHIRFMPNRSGIYTLSVFYGGREVTNSPLRLRV 587
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +3
Query: 30 IDREPLLVDVHPPHHGQEVAASGLGLYQAQVNKVASFSIDTLGRPAREFDVVVSGPGSRA 209
I P VDV P + A G GL AQ+NK A F+++T G A + + GP
Sbjct: 1462 IPGSPFKVDVLPVTDPSKCKAYGPGLQHAQLNKPADFTVETKGAGAGGLSLAIEGPSEAK 1521
Query: 210 L 212
L
Sbjct: 1522 L 1522
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 559 YRIYITYGGAPILGSPISLGVLSGRSSSAAKCSGTGLAHAHV--GKEAAFTIHCAEDTSP 732
+R+ +TYG + GSP + + SS K +G G+A V GK FTI C +
Sbjct: 1256 HRVNVTYGSKHVPGSPFKVPIKPAGDSSKVKVAGPGVAPTGVNPGKPTWFTIDCKDAGKG 1315
Query: 733 TVEV 744
V V
Sbjct: 1316 DVHV 1319
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 275 GQSTIEVLHLSKPVSGSPYTCESFD--PNRVIVSGLPTGNIVAQTPINFSVVTKDAGVGE 448
G + V + +P+ GSP+ + + P V G +A+ P F+VVT+DAG G
Sbjct: 1933 GPHELTVKYDDQPIPGSPFKFNAVEGGPGAVKAFGKGLERGLAKEPCEFTVVTRDAGPGG 1992
Query: 449 LDVVCEAMGERRIR 490
L + E + I+
Sbjct: 1993 LSLAVEGPSKAEIK 2006
Score = 37.1 bits (82), Expect = 0.015
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 559 YRIYITYGGAPILGSPISLGVLSGRSSSAAKCSGTGLAHAHVGKEAAFTIHCAE 720
Y + +++G P GSP + V ++ K G GL A + + A F + C++
Sbjct: 1356 YNVKVSFGDKPAPGSPFRVNVAKAGNAGKCKAQGDGLETAIINQLAEFDVDCSQ 1409
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +2
Query: 269 EVGQSTIEVLHLSKPVSGSPYTCES---FDPNRVIVSGLPTGNI---VAQTPINFSVVTK 430
E G I + + + GSP+T ++ DP++V G + ++TP F+V T
Sbjct: 1540 EEGDYDIHIKFADEHIPGSPFTAKAGRPVDPSKVKCHGPGVDRVNPLFSKTPQRFTVDTT 1599
Query: 431 DAGVGELDVVCEAMGERRIR 490
+AGV LDV E + I+
Sbjct: 1600 EAGVAPLDVSVETPNRQTIK 1619
Score = 35.9 bits (79), Expect = 0.036
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1
Query: 571 ITYGGAPILGSPISLGVLSGRSSSAAKCSGTGLAHAHVGKEAAFTI 708
+ +G I GSP + VL S K G GL HA + K A FT+
Sbjct: 1455 VKFGDDHIPGSPFKVDVLPVTDPSKCKAYGPGLQHAQLNKPADFTV 1500
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 517 HTHRVRLRPTVPSHYRIYITYGGAPILGSPISLGVLSGRSSSAAKC--SGTGLAHAHVGK 690
+++ +R P + I + Y G I GSP + V + AAKC +G GL VG
Sbjct: 2844 NSYTIRFMPKESGEHVINVKYRGRHISGSPFKVYVEAPVWGGAAKCTAAGPGLERGVVGH 2903
Query: 691 EAAFTI 708
FT+
Sbjct: 2904 PGDFTV 2909
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 523 HRVRLRPTVPSHYRIYITYGGAPILGSPISLGVLSGRSS-SAAKCSGTGLAHAHVGKEAA 699
+ +R P + + + + I GSP + V G + K G GL+ H GK A
Sbjct: 3037 YAIRFVPKEFGDHLVNVKFDETHIPGSPFKIRVGGGGAHPEKVKAYGPGLSSGHAGKSAE 3096
Query: 700 FTIHCAE 720
FT++ E
Sbjct: 3097 FTVNALE 3103
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +1
Query: 505 PKDGHTHRVRLRPTVPSHYRIYITYGGAPILGSPISLGVLSGRSS---SAAKCSGTGL-- 669
P+D V +P + I + YGG PI GSP + V + S K G G+
Sbjct: 761 PQDNQEFLVEYQPVNTGKHTIKVGYGGQPIHGSPFHVMVSPPKVDPIPSKVKVFGAGVEP 820
Query: 670 AHAHVGKEAAFTI 708
G A FT+
Sbjct: 821 TGLKAGMRAPFTV 833
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +2
Query: 230 NQVWLVASKFTINEVGQSTIEVLHLSKPVSGSPYTCESF---DPNRVIVSGLPTGNIVAQ 400
NQ +T E G + V + GSP+ + DP++ G +
Sbjct: 1434 NQDGSFGVSYTPFEEGIHDLAVKFGDDHIPGSPFKVDVLPVTDPSKCKAYGPGLQHAQLN 1493
Query: 401 TPINFSVVTKDAGVGELDVVCEAMGERRI 487
P +F+V TK AG G L + E E ++
Sbjct: 1494 KPADFTVETKGAGAGGLSLAIEGPSEAKL 1522
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +2
Query: 254 KFTINEVGQSTIEVLHLSKPVSGSPYTCESFDP-----NRVIVSGLPTGNIVAQTPINFS 418
+F E G+ I V + + +SGSP+ P + +G V P +F+
Sbjct: 2849 RFMPKESGEHVINVKYRGRHISGSPFKVYVEAPVWGGAAKCTAAGPGLERGVVGHPGDFT 2908
Query: 419 VVTKDAGVGELDVVCEAMGERRI 487
V T+DAG G L + E + I
Sbjct: 2909 VWTRDAGPGGLAIAVEGPAKAEI 2931
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = +3
Query: 15 WSGAPIDREPLLVDVHPPHHG---QEVAASGLGLYQA--QVNKVASFSIDTLGRPAREFD 179
+ G PI P V V PP +V G G+ + A F++DT G E D
Sbjct: 785 YGGQPIHGSPFHVMVSPPKVDPIPSKVKVFGAGVEPTGLKAGMRAPFTVDTRGAGDGELD 844
Query: 180 VVVSGP 197
V V GP
Sbjct: 845 VFVEGP 850
>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 529 VRLRPTVPSHYRIYITYGGAPILGSPISLGVL 624
VR PT Y + I +G PILGSP + ++
Sbjct: 175 VRYNPTEAGRYTVNIRWGDEPILGSPFEVNIV 206
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 487 PTAR*HPKDGHT-HRVRLRPTVPSHYRIYITYGGAPILGSP 606
P + +D +T H+V PT P Y I+I +G I GSP
Sbjct: 778 PYVKSDKRDSYTEHKVVYIPTEPGTYEIFIKWGEHGIRGSP 818
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 622 LSGRSSSAAKCSGTGLAHAHVGKEAAFTIHC--AEDTSPTVEVE 747
L R K GTGL +GK A FT+ A T T+ +E
Sbjct: 549 LRSREEIVCKAYGTGLKEGELGKVAEFTVELNGARPTDVTIAIE 592
>SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)
Length = 533
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 511 DGHTHRVRLRPTVPSHYRIYITYGGAPILGSPISLGVLS 627
DG+ + RP Y++ +T G + GSP L V S
Sbjct: 359 DGYGYEFTYRPPDEGFYKLSVTVNGVHVRGSPFQLSVRS 397
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 29.5 bits (63), Expect = 3.1
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +2
Query: 143 YRHPGSTCS-GIRRGRLWTWLSSTARKMLSNQVWLVASKFTINEVGQSTIEVLHLSKPVS 319
+R+ S C G R RL L+++AR + S+ W S + + +VG I S +
Sbjct: 242 HRNSISVCMVGAARPRLAV-LNASARGLESSSAWFNGSSYVLYDVG---IHQPGRSTLTN 297
Query: 320 GSPYTCESFDPNRVIV-SGLPTGNIVAQTPINFSVVTKDAGVGELDV 457
+ + +P+ VIV S + ++V + F V+ D G G L++
Sbjct: 298 TIAFRFATGNPDGVIVHSSMFDDHVVVELSKGFVRVSFDLGQGRLNI 344
>SB_58727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 622 KLPKILDCLILEHLHK*CKSCNVRVQWDAIALCVC 518
++P +LD ++L H K CK+C+VR + + A+ C
Sbjct: 48 RVPWLLDEVVLAH--KSCKNCSVRAEVEIRAILKC 80
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 511 DGHTHRVRLRPTVPSHYRIYITYGGAPILGSPISLGVLS 627
DG+ + P +Y++ +T G + GSP L V S
Sbjct: 432 DGYGYEFTYTPPDDGYYKLSVTVNGEHVRGSPFQLSVRS 470
>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2225
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 289 YSTLSNFINSEFACNKPDLV**HLTGSAREPGPET 185
+S S+ ++E A N PDL G REP PE+
Sbjct: 2089 FSEFSDMTDAELARNYPDLFKGRFPGPPREPYPES 2123
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 520 THRVRLRPTVPSHYRIYITYGGAPI 594
TH R +PTV + +YIT G P+
Sbjct: 454 THSFRHKPTVEGEHFLYITVNGRPL 478
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 306 PSRYPGVHTHASPSTQT 356
P+++PGV H SPSTQ+
Sbjct: 130 PNQFPGVELHNSPSTQS 146
>SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 288 IVLCPTSLIVNLLATSQTWFDNILRAVLESQVQRRPRRIPEQVDPG 151
+V+CP S + N +A + W +I L ++R I + + PG
Sbjct: 106 MVICPKSTLANWMAEFERWCPSIRAVCLIGNQEQRTAFIRDTMLPG 151
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 557 CEGTVGRNR-TLCVCPSFGCQRAVGCDAHPSLHTPRLIHQHPRP 429
CE +GR R V GC R G H +HT H+H RP
Sbjct: 144 CESDIGRIRGRQTVSLGQGC-RNPGHVTHELMHTLGFYHEHTRP 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,189,454
Number of Sequences: 59808
Number of extensions: 671746
Number of successful extensions: 1823
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1821
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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