Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31048
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    29   1.9  
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-...    27   5.7  
U50310-4|ABB51170.1|  409|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U50310-3|AAA92540.4|  411|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 355 YHGSSSQL*HNAAGH*ISVVCLCSSGCAS 269
           YH +S QL     GH  +V CLCSS  +S
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSS 924


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 289 CSSGCASCRYSRELKPSTGATNGVNRPP 206
           C   C +C     ++P+T A N + RPP
Sbjct: 68  CQLACNTCTRKNVIRPATKAPNRMRRPP 95


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 289 CSSGCASCRYSRELKPSTGATNGVNRPP 206
           C   C +C     ++P+T A N + RPP
Sbjct: 68  CQLACNTCTRKNVIRPATKAPNRMRRPP 95


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 304 SVVCLCSSGCASCRYSRELKPSTGATNGVNRP 209
           S+ C  +S C + ++SRE +  +G  NG  RP
Sbjct: 104 SLSCRDASACGTWQFSREFEWYSGRPNGQARP 135


>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
           protein R13H4.1 protein.
          Length = 1305

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 441 FNSNKTEKVRSWSDVENG 388
           FN N  +K+R W+D++ G
Sbjct: 828 FNENSLDKIRQWNDLKEG 845


>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
           nephrocystin-4-like protein protein.
          Length = 1305

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 441 FNSNKTEKVRSWSDVENG 388
           FN N  +K+R W+D++ G
Sbjct: 828 FNENSLDKIRQWNDLKEG 845


>U50310-4|ABB51170.1|  409|Caenorhabditis elegans Hypothetical
           protein ZC487.1b protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +1

Query: 244 VSAHGNSGRKHSRCCTS---ILRKFSGRQ-HCVTVDCCCHGSPHAMR*C*TSPVLDIAPG 411
           V  + + G + S  C+S   IL   S  + H   ++C  +  P+A+     +   DI PG
Sbjct: 160 VQEYVDDGHEFSAVCSSSDGILGCISAIETHRSVLECIQNQQPYALEYLSANQTRDIFPG 219

Query: 412 SDLFCFIGIK 441
            + FC   IK
Sbjct: 220 LESFCIQVIK 229


>U50310-3|AAA92540.4|  411|Caenorhabditis elegans Hypothetical
           protein ZC487.1a protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +1

Query: 244 VSAHGNSGRKHSRCCTS---ILRKFSGRQ-HCVTVDCCCHGSPHAMR*C*TSPVLDIAPG 411
           V  + + G + S  C+S   IL   S  + H   ++C  +  P+A+     +   DI PG
Sbjct: 162 VQEYVDDGHEFSAVCSSSDGILGCISAIETHRSVLECIQNQQPYALEYLSANQTRDIFPG 221

Query: 412 SDLFCFIGIK 441
            + FC   IK
Sbjct: 222 LESFCIQVIK 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,746,434
Number of Sequences: 27780
Number of extensions: 204389
Number of successful extensions: 454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)