Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31047
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   5e-22
SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          31   1.4  
SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)                   30   2.4  
SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_45294| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)           28   9.5  

>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score =  101 bits (243), Expect = 5e-22
 Identities = 44/82 (53%), Positives = 59/82 (71%)
 Frame = +2

Query: 509 LNSGGFIGYLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDHKSEIFQNLN 688
           L S GFIGY P  ++IIN  P+KD+DDDQL+YT IYLDK+ R+   + LDHK+EIF NLN
Sbjct: 131 LYSSGFIGYAPVFHQIINEKPVKDEDDDQLFYTNIYLDKEKRDKFNMKLDHKAEIFMNLN 190

Query: 689 GALSDVQLRANTTEEWPYIEMW 754
           GA  +VQL+    + W Y +++
Sbjct: 191 GAEEEVQLKFEGEKVWLYNKVY 212



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = +1

Query: 127 EVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEEWSGGDI-TSP 264
           E++VLTVAT++  G  RF+RS   Y++ V V+G    W GG++ T P
Sbjct: 35  ELLVLTVATEETDGYTRFMRSCSHYDVPVRVIGMNTSWKGGNVRTDP 81


>SB_23732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 571 WVAIDNLIYFWQVTYKSTRVQYGLTTSMFG 482
           W  ++  +  W  TY  + V +GLT+SMFG
Sbjct: 85  WSTLEFYVNEWPETYCRSAVAFGLTSSMFG 114


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 103 NSHTQATDEVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEE 237
           NS   A++E+ +LT +  D   +   LRS K   ++V+ +G+G+E
Sbjct: 527 NSVVTASEEISLLTDSEGDQRVVTEELRSDKRIRVNVQGMGEGDE 571


>SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)
          Length = 341

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 288 LKNRLEKLMKADNKEKIILFTDS-YDVMFLGNLDEIVKKFKSFPDT 422
           LK  L +L K D+ ++ I + D+    ++ GN  ++V     FPDT
Sbjct: 288 LKGLLYRLYKVDSSDQKISYLDTKICTIYTGNFRDVVNGLVQFPDT 333


>SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -3

Query: 490 MFGY*VASFASGQQNCSAEKSTRVSGKDLNFFTISS 383
           +FGY + S   G Q CS     R      NFFT  S
Sbjct: 317 IFGYDIISDGRGNQRCSVHPDRRTLKASFNFFTFWS 352


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 753 HISIYGHSSVVLALSCTSERAP 688
           H+S  GH S+V +L  TS+R+P
Sbjct: 47  HVSTSGHDSIVRSLCITSQRSP 68


>SB_45294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 506 WTYNFNVWILSCKF--CIRPTKLFSRKKHTCI 417
           W + F ++   CK   C+ P +LFS K   C+
Sbjct: 7   WLFAFYIYACPCKLTVCVSPLRLFSCKLTVCV 38


>SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 19  VELIFMMWFTQ-KMGLFIQLILCVFVILFNSH 111
           V++ FM+ FT  + GLF  +++C ++I    H
Sbjct: 229 VDMPFMLLFTDIRQGLFYAMLMCFWIIFTGEH 260


>SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)
          Length = 299

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 628 ILIKIYLCVVQXXXXXXLDWVAIDNLIYFWQVTYKS 521
           IL+ +YLC++        +W  +D+  Y W +T+ +
Sbjct: 133 ILVTVYLCLMAGLGMYLEEWSFLDS-FYAWFITFST 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,860,866
Number of Sequences: 59808
Number of extensions: 496386
Number of successful extensions: 1249
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)