Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31047
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15240.1 68417.m02336 fringe-related protein + weak similarit...    30   2.0  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    29   3.4  
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel...    29   4.5  
At5g41080.2 68418.m04994 glycerophosphoryl diester phosphodieste...    28   6.0  
At5g41080.1 68418.m04993 glycerophosphoryl diester phosphodieste...    28   6.0  
At5g11660.1 68418.m01363 hypothetical protein many predicted pro...    28   6.0  
At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein...    28   7.9  
At3g52670.1 68416.m05802 F-box family protein contains F-box dom...    28   7.9  

>At4g15240.1 68417.m02336 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 488

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 237 VVRW*HNFPGGGQKVILLKNRL-EKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKF 404
           V R+ +NFPGG +  I +   + E + + D   +  +F D   V F+ NL  ++ K+
Sbjct: 136 VSRFPYNFPGGLRSAIRVARVVKETVDRGDKDVRWFVFGDDDTVFFVDNLVTVLSKY 192


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/77 (27%), Positives = 38/77 (49%)
 Frame = +3

Query: 273 QKVILLKNRLEKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFC 452
           +++ + K  LE L +   KEK +L    +D+  +   DE+ KK  +F  ++ L   ++  
Sbjct: 406 REISVQKELLEDLREELQKEKPLLELAMHDISVIQ--DELYKKANAFQVSQNLLQEKESS 463

Query: 453 WPDAKLATQYPNIEVVS 503
             +AKL  Q+   E  S
Sbjct: 464 LVEAKLEIQHLKSEQAS 480


>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
           putative (CNGC18) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 706

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 406 SLFLIHVCFFLLNNFVGLMQNLQLNIQTLKL*VHIELWWIYR 531
           +LF I +C F L  F  L+ N+Q ++Q++   V +E W + R
Sbjct: 345 TLFCITICIFGLILFTLLIGNMQSSLQSMS--VRVEEWRVKR 384


>At5g41080.2 68418.m04994 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 358

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 353 VSEKYYFLFVVSFHQLLKPVFQKNYFLSTTGEVMSPPDHSSPLPNTS 213
           V E  Y  +V+    ++   F +    STT  ++ PP  SSPLP+ S
Sbjct: 283 VGEAVYMQYVMGIDGVIVD-FVEEIIESTTRMMIRPPPSSSPLPSPS 328


>At5g41080.1 68418.m04993 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           SP|P37965 Glycerophosphoryl diester phosphodiesterase
           (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 374

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 353 VSEKYYFLFVVSFHQLLKPVFQKNYFLSTTGEVMSPPDHSSPLPNTS 213
           V E  Y  +V+    ++   F +    STT  ++ PP  SSPLP+ S
Sbjct: 299 VGEAVYMQYVMGIDGVIVD-FVEEIIESTTRMMIRPPPSSSPLPSPS 344


>At5g11660.1 68418.m01363 hypothetical protein many predicted
           proteins, Arabidopsis thaliana
          Length = 308

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   SLFGDGRTYIYDVVHSKNGT 62
           SLFGDGRT+ + V    NGT
Sbjct: 121 SLFGDGRTWSFGVWKGANGT 140


>At5g20990.1 68418.m02495 molybdopterin biosynthesis CNX1 protein /
           molybdenum cofactor biosynthesis enzyme CNX1 (CNX1)
           identical to SP|Q39054 Molybdopterin biosynthesis CNX1
           protein (Molybdenum cofactor biosynthesis enzyme CNX1)
           {Arabidopsis thaliana}
          Length = 670

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 127 EVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEEWSGGDITSPVVDKK 279
           +VV L +  DD   LE+ L  A    +D+ +   G      D   P++++K
Sbjct: 233 KVVDLGIVRDDRKELEKVLDEAVSSGVDIILTSGGVSMGDRDFVKPLLEEK 283


>At3g52670.1 68416.m05802 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 384

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 21  RTYIYDVVHSKNGTFYTINIMCICY 95
           R  I DV+H K    YTIN+ C+ Y
Sbjct: 175 RLEICDVLHKKEFRRYTINVPCLKY 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,820,503
Number of Sequences: 28952
Number of extensions: 351925
Number of successful extensions: 929
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)