Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31044
         (374 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8UHC3 Cluster: Putative uncharacterized protein Atu075...    32   3.0  
UniRef50_A7AD36 Cluster: Putative uncharacterized protein; n=2; ...    31   9.1  
UniRef50_Q22BJ7 Cluster: IBR domain containing protein; n=1; Tet...    31   9.1  

>UniRef50_Q8UHC3 Cluster: Putative uncharacterized protein Atu0759;
           n=1; Agrobacterium tumefaciens str. C58|Rep: Putative
           uncharacterized protein Atu0759 - Agrobacterium
           tumefaciens (strain C58 / ATCC 33970)
          Length = 149

 Score = 32.3 bits (70), Expect = 3.0
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 90  ASALNKIRNRKSIGFLNVNFKFTRHSIEAVA 182
           A  +  I   KS GF+  NFK TRHS E VA
Sbjct: 97  AGVVTTIHEDKSSGFVCRNFKTTRHSFEGVA 127


>UniRef50_A7AD36 Cluster: Putative uncharacterized protein; n=2;
           Bacteroidales|Rep: Putative uncharacterized protein -
           Parabacteroides merdae ATCC 43184
          Length = 354

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -2

Query: 250 ARGERMALTVTRHVCHTGHQQLNATASMECLVNLKLTFKNPILFLFRILFKADARRSRHA 71
           +RG R+  T +  V H G   LN  +  +  +N    F+N +L L++ L + D +   HA
Sbjct: 222 SRGYRLVCTPSSVVYHVGGATLNVESPRKTFLN----FRNNLLMLYKNLPEKDLKHVMHA 277


>UniRef50_Q22BJ7 Cluster: IBR domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: IBR domain containing
           protein - Tetrahymena thermophila SB210
          Length = 444

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 141 HLKILYSFYFGFCSKRTRDAHVTQKLYSS-TKGENE 37
           +++ +Y FYF FC K   D + +QK  +S T  +NE
Sbjct: 146 NIRFVYQFYFKFCQKSKNDPNKSQKESNSRTDYDNE 181


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,143,692
Number of Sequences: 1657284
Number of extensions: 6065123
Number of successful extensions: 15334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15326
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)