Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31044
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.24 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   0.96 
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   2.2  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   3.9  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   3.9  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   3.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   5.1  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   6.8  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    24   6.8  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    24   6.8  

>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 223 VTRHVCHTGHQQLNATASMECLVNLKLTFKNPILFLFRILFKA 95
           + RH C  G  +  A A   CL N   TF+   L +  I+  +
Sbjct: 300 MARHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINS 342


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 165  SIEAVAFSCWCPVWQTCRVTVSAIRS 242
            ++E VAF C CP+  T  VT+S IR+
Sbjct: 1075 ALEIVAFLCSCPL--TSEVTLSVIRA 1098


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 129 LYSFYFGFCSKRTRDAHVTQKLYSSTKGENEYWEILNYT*SSY 1
           L+SF F F    T D  +   L + T G   Y++  ++T ++Y
Sbjct: 78  LFSFAFAFDFDVTSDDSINSALTTVTDGMLNYYQSTSHTFTAY 120


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 96   ALNKIRNRKSIGFLNVNFKFTRHSIEAVAFS 188
            ALN I N  +I F NV   FTR S+E + +S
Sbjct: 1114 ALNVIGN--AIKFTNVGEVFTRCSVEKIDYS 1142


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 117 YFGFCSKRTRDAHVTQKLYSSTKG 46
           Y  FC K+ ++    ++LY S KG
Sbjct: 331 YITFCDKKFKEDEDAKRLYMSNKG 354


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 217 RHVCHTGHQQLNATASMECLVNL 149
           RH+ H    QL AT  + CLV L
Sbjct: 224 RHLLHPAELQLAATLRLPCLVYL 246


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 213  CRVTVSAIRSPRAVWLATLAHPLSLLAKL 299
            CR+T+  + SPR  +L +L   + L+ +L
Sbjct: 1450 CRITILMLSSPRDFFLPSLPPLIDLVKRL 1478


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 193  QQLNATASMECLVNLKLTFKNPILFLFR 110
            Q+++ +   ECL N    + NPI +L R
Sbjct: 1557 QEMDMSTVAECLNNHPSLYSNPIHYLLR 1584


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 216  RVTVSAIRSPRAVWLATLAHPLSLLAKL-NKYH 311
            R  ++ +RSP   +LA + HP  ++ K+ N Y+
Sbjct: 1265 RDAIAGVRSPCGRFLAMMPHPERVVLKVANSYY 1297


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 60  YITSA*RERLASALNKIRNRKSIGFLNVNFKFTRHSIEAVAFSC 191
           Y++     RL +  NK+    ++  L ++ KF     E VA SC
Sbjct: 798 YLSRVTGTRLTNETNKLDQDFTVHHLQIHDKFVSLMRERVAISC 841


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,157
Number of Sequences: 5004
Number of extensions: 24906
Number of successful extensions: 48
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)