Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31044
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0548 - 11403442-11404205,11404520-11404811,11404917-114050...    30   0.68 
04_01_0435 + 5693035-5693669,5694999-5695241,5695806-5696007,569...    29   1.2  
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968     28   2.1  
11_06_0244 + 21652030-21652302,21652478-21652645,21652993-21653169     27   6.3  
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043...    26   8.4  
11_06_0366 + 22744584-22744835,22745248-22745335,22745657-227457...    26   8.4  
11_06_0363 + 22724802-22725053,22725466-22725553,22725875-227259...    26   8.4  
11_06_0243 + 21648049-21648318,21648492-21648668                       26   8.4  
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067...    26   8.4  
05_05_0180 - 23027979-23028092,23028180-23028255,23028342-230284...    26   8.4  
04_01_0184 - 2085271-2085387,2085642-2085730,2086582-2086813,208...    26   8.4  
03_06_0197 - 32271760-32271922,32272134-32272303                       26   8.4  
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656...    26   8.4  
02_04_0004 - 18837526-18837639,18838161-18838262,18838338-188385...    26   8.4  
01_05_0318 - 20826377-20826571,20826663-20826764,20826839-208269...    26   8.4  

>02_02_0548 -
           11403442-11404205,11404520-11404811,11404917-11405016,
           11405049-11405458
          Length = 521

 Score = 29.9 bits (64), Expect = 0.68
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +3

Query: 138 NVNFKFTRHSIEAVAFSCWCPVWQ----TCRVTVSAIRSPRAVWLATLAHP 278
           N++    RH+++     C C  WQ     CR  +S IRS R V L     P
Sbjct: 442 NMDLTTWRHTVDLTKQECSCKEWQLTGLPCRHDISFIRSLREVDLENYVSP 492


>04_01_0435 +
           5693035-5693669,5694999-5695241,5695806-5696007,
           5696188-5696583
          Length = 491

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 288 VMTRGELT-WRATRPAANGWHLRSHGTSATRDT 193
           ++ +  LT W A RPA NGW  R   T  T  T
Sbjct: 139 ILGKASLTEWSAYRPAPNGWSARGGQTLVTPTT 171


>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
          Length = 800

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 81  ERLASALNKIRNRKSIGFLNVNFKFT 158
           E+  + L  I NR+ +G+LN+NF  T
Sbjct: 381 EQFKACLRHIFNREGVGYLNMNFNAT 406


>11_06_0244 + 21652030-21652302,21652478-21652645,21652993-21653169
          Length = 205

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 267 TWRATRPAANGWHLRSHGTSATRDTNN*TPPLQW 166
           T+   RPA N W L +   SA   T +   PL+W
Sbjct: 32  TYHYYRPAENNWDLGAPAVSAYCATWDADKPLEW 65


>12_02_0761 -
           22901121-22901917,22902111-22902707,22904282-22904358,
           22906543-22907135,22907552-22908118,22908431-22908958,
           22909115-22909432,22910622-22910656,22910986-22911301
          Length = 1275

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 261 RATRPAANGWHLRSHGTSATRDTNN 187
           R   P A  WHLR HG  +TR T N
Sbjct: 48  RTPEPVAPVWHLRPHG--STRATVN 70


>11_06_0366 +
           22744584-22744835,22745248-22745335,22745657-22745702,
           22746159-22746345,22746436-22746507,22746597-22746728
          Length = 258

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 180 AFSCWCPVWQTCRVTVSA 233
           A SCW P W T  + ++A
Sbjct: 97  ACSCWVPPWTTAAIVINA 114


>11_06_0363 +
           22724802-22725053,22725466-22725553,22725875-22725920,
           22726377-22726563,22726654-22726725,22726815-22726946
          Length = 258

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 180 AFSCWCPVWQTCRVTVSA 233
           A SCW P W T  + ++A
Sbjct: 97  ACSCWVPPWTTAAIVINA 114


>11_06_0243 + 21648049-21648318,21648492-21648668
          Length = 148

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 267 TWRATRPAANGWHLRSHGTSATRDTNN*TPPLQW 166
           T+   RPA N W L +   SA   T +   PL W
Sbjct: 31  TYHYYRPAQNNWDLGAPAVSAYCATWDANKPLSW 64


>06_03_0824 +
           25105450-25105482,25105649-25106485,25106580-25106738,
           25106830-25106886,25106971-25107202,25107338-25107638,
           25107703-25107976,25108051-25108152,25108244-25108525
          Length = 758

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 78  RERLASALNKIRNRKSIGFLN 140
           ++  A+  +KIR+RKSIG++N
Sbjct: 263 KDAAAALQHKIRHRKSIGYIN 283


>05_05_0180 -
           23027979-23028092,23028180-23028255,23028342-23028433,
           23028689-23028790,23028865-23029138,23029203-23029503,
           23029639-23029870,23029955-23030011,23030103-23030261,
           23030356-23031192,23031383-23031437,23032103-23032158
          Length = 784

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 78  RERLASALNKIRNRKSIGFLN 140
           ++  A+  +KIR+RKSIG++N
Sbjct: 289 KDAAAALQHKIRHRKSIGYIN 309


>04_01_0184 -
           2085271-2085387,2085642-2085730,2086582-2086813,
           2086898-2086990,2087046-2087204,2087298-2088134,
           2088353-2088385
          Length = 519

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 78  RERLASALNKIRNRKSIGFLN 140
           ++  A+  +KIR+RKSIG++N
Sbjct: 263 KDAAAALQHKIRHRKSIGYIN 283


>03_06_0197 - 32271760-32271922,32272134-32272303
          Length = 110

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 292 ASNDKG*ANVASHTARGERMALTVTRHVCHTGHQQLNATASME 164
           A+  +G A V    A G+R      +H C + H   N    ME
Sbjct: 31  AARRRGRAAVRPREAGGQRSRAAGNKHACPSTHGSQNVAVEME 73


>03_02_0225 +
           6565337-6565369,6565564-6565734,6566113-6566400,
           6566495-6566653,6566745-6566801,6566886-6567117,
           6567253-6567553,6567618-6567891,6567966-6568067,
           6568159-6568440
          Length = 632

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 78  RERLASALNKIRNRKSIGFLN 140
           ++  A+  +KIR+RKSIG++N
Sbjct: 137 KDAAATLQHKIRHRKSIGYIN 157


>02_04_0004 -
           18837526-18837639,18838161-18838262,18838338-18838536,
           18838610-18838910,18839359-18839404,18839494-18839652,
           18839747-18840583,18840719-18840766
          Length = 601

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 78  RERLASALNKIRNRKSIGFLN 140
           ++  A+  +KIR+RKSIG++N
Sbjct: 268 KDAAAALQDKIRHRKSIGYIN 288


>01_05_0318 -
           20826377-20826571,20826663-20826764,20826839-20826973,
           20827924-20828016,20828072-20828230,20828325-20828929,
           20829098-20829119,20829339-20829393,20829426-20829466,
           20830250-20830363
          Length = 506

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 78  RERLASALNKIRNRKSIGFLN 140
           ++  A+  +KIR+RKSIG++N
Sbjct: 252 KDAAAALQHKIRHRKSIGYIN 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,019,936
Number of Sequences: 37544
Number of extensions: 164209
Number of successful extensions: 371
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)