Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31044
(374 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17015| Best HMM Match : 7tm_1 (HMM E-Value=0.00027) 29 1.2
SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3) 29 1.6
SB_24603| Best HMM Match : GatB_Yqey (HMM E-Value=0.7) 28 2.1
SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065) 28 2.1
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16) 28 2.8
SB_34244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_5307| Best HMM Match : 7tm_1 (HMM E-Value=1.69557e-43) 27 3.7
SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_49589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) 27 5.0
SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_56193| Best HMM Match : RolB_RolC (HMM E-Value=5.3) 27 6.5
SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5) 27 6.5
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2) 27 6.5
SB_54646| Best HMM Match : WCCH (HMM E-Value=1.3) 27 6.5
SB_16258| Best HMM Match : DUF917 (HMM E-Value=4.4) 27 6.5
SB_57874| Best HMM Match : LIM (HMM E-Value=0.44) 26 8.7
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25) 26 8.7
SB_29287| Best HMM Match : Homeobox (HMM E-Value=1.4e-25) 26 8.7
SB_18691| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_5396| Best HMM Match : DEAD (HMM E-Value=0.73) 26 8.7
SB_22821| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1) 26 8.7
SB_8992| Best HMM Match : Homeobox (HMM E-Value=1.4e-25) 26 8.7
>SB_17015| Best HMM Match : 7tm_1 (HMM E-Value=0.00027)
Length = 251
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 165 SIEAVAFSCWCP--VWQTCRVTVSAIRSPRAVWLATLAHPLSLLA 293
++ AV F CWCP +W + V + RA+ +T H +A
Sbjct: 147 TVYAVFFLCWCPSWIWVITCLFVPSPHGKRAICTSTQYHIFRFIA 191
>SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3)
Length = 491
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 191 TTKRHRFNGMPCKLKINI*KSYTLSISDFV 102
T K HR +G+PC+ + N YTL +S V
Sbjct: 101 TFKSHRADGLPCEGQYNAAVLYTLHVSPVV 130
>SB_24603| Best HMM Match : GatB_Yqey (HMM E-Value=0.7)
Length = 984
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +2
Query: 194 VSRVADV---PCDRKCHPFAAGRVARHV 268
V R+ADV P C+P+ +GRV +H+
Sbjct: 307 VYRIADVAGRPLSEACNPYTSGRVGQHL 334
>SB_23438| Best HMM Match : zf-CCHC (HMM E-Value=0.00065)
Length = 1275
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 230 CHPFAAGRVARHVSSPLVITR 292
CHP+ +GR ARH ++ R
Sbjct: 295 CHPYTSGRCARHGDESSIVVR 315
>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
Length = 748
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 254 HGPRRTDGTYGHTARL 207
HGP RT GT GH R+
Sbjct: 32 HGPSRTHGTMGHQGRM 47
>SB_34244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 266 RGEPHGPRRTDGTYGHTARLPHGTPTTKRHRFNGMPCK 153
+G PH P+ T G PHGT TK+ G CK
Sbjct: 69 KGRPHVPQ-TKGVAEDNVT-PHGTLATKQPEIKGEDCK 104
>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 285 MTRGELTWRATRPAANGWHLRSHGT 211
M RGE TW R GW +RS T
Sbjct: 1107 MLRGEPTWPELRQYGVGWWIRSQDT 1131
>SB_5307| Best HMM Match : 7tm_1 (HMM E-Value=1.69557e-43)
Length = 632
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 247 RGERMALTVTRHVCHTGHQQLNATASMECLVNLKLTFKNPIL 122
RG ++ + RH HQ+L +S+ +V +K K+P++
Sbjct: 559 RGMQLLNSEGRHPLEYKHQELKRASSLSTIVTVKRERKSPVV 600
>SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = +2
Query: 194 VSRVADVPCD----RKCHPFAAGRVARHV 268
V R+ADV + CHP+ +GRV +H+
Sbjct: 476 VYRIADVLTEWEFFEACHPYTSGRVGQHL 504
>SB_49589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 282 TRGELTWRATRPAANGWHLRSHGTSATRDTNN 187
TR L T P NGW L + S + D NN
Sbjct: 51 TRVVLQRSETEPRRNGWRLTAKQESCSLDVNN 82
>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
Length = 992
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 206 ADVPCDRKCHPFAAGRVARHV 268
AD CHP+ +GRV +H+
Sbjct: 403 ADRVASEACHPYTSGRVGQHL 423
>SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1521
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 208 CHTGHQQLNATASMECLVNLKLTFKNPILFLFRILFKADARRSR 77
CH H+QL AT L + + + P F +F++D R R
Sbjct: 524 CHGPHRQLEATQLCNVLSDAPVLVEQPSWFSPTSIFESDWNRIR 567
>SB_56193| Best HMM Match : RolB_RolC (HMM E-Value=5.3)
Length = 337
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 230 CHPFAAGRVARHV 268
CHPF +GRV +H+
Sbjct: 64 CHPFTSGRVGQHL 76
>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 200 GTPTTKRHRFNGMPCK 153
GTP+ KRH G+PC+
Sbjct: 152 GTPSKKRHLLAGIPCQ 167
>SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)
Length = 592
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 262 ASHTARGERMALTVTRHVCHTGHQQLNATASMECLVNLKLT-FKNPILFLFRIL 104
A++T + + + RHVCH +L A + CL + T +N I+ L +IL
Sbjct: 190 ATNTDKADHLDYENFRHVCHKWQYKL-TKALVVCLESKDYTQIRNTIMVLTKIL 242
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 262 ASHTARGERMALTVTRHVCHTGHQQLNATASMECLVNLKLTFKNPILFL 116
A H AR R +C TG +++NA +EC+V F F+
Sbjct: 101 AQHMARDRRKWKRFVAALCPTGDEEVNA-LMLECIVYFFYVFFEVFSFI 148
>SB_7559| Best HMM Match : Metallothio_2 (HMM E-Value=2)
Length = 532
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 191 TTKRHRFNGMPCKLKINI*KSYTLSI 114
T K HR +G+PC+ + N YTL +
Sbjct: 150 TFKSHRADGLPCEGQYNATVLYTLQV 175
>SB_54646| Best HMM Match : WCCH (HMM E-Value=1.3)
Length = 744
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 230 CHPFAAGRVARHV 268
CHPF +GRV +H+
Sbjct: 628 CHPFTSGRVGQHL 640
>SB_16258| Best HMM Match : DUF917 (HMM E-Value=4.4)
Length = 667
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 230 CHPFAAGRVARHV 268
CHP+ AGRV +H+
Sbjct: 577 CHPYTAGRVGQHL 589
>SB_57874| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 1037
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Frame = +2
Query: 200 RVADVPCD----RKCHPFAAGRVARHV 268
R+ADV + CHP+ +GRV +H+
Sbjct: 430 RIADVLTEWEFSEACHPYTSGRVGQHL 456
>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
Length = 389
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 60 YITSA*RERLASALNKIRNRKSIGFLNVNFKFTRHSIEAV 179
Y+T A R +LAS L N+ + F N K+ + + E V
Sbjct: 338 YLTKADRHQLASMLGLTDNQVKVWFQNRRMKWRQDARETV 377
>SB_29287| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)
Length = 207
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 60 YITSA*RERLASALNKIRNRKSIGFLNVNFKFTRHSIEAV 179
Y+T A R +LAS L N+ + F N K+ + + E+V
Sbjct: 155 YLTKADRHQLASMLGLSDNQVKVWFQNRRMKWRQDARESV 194
>SB_18691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 352 LNILLKKKE*SKATWYLFNLASNDK 278
LN + KKKE + + FNLA++DK
Sbjct: 49 LNFMEKKKEEAGYAMHAFNLAASDK 73
>SB_5396| Best HMM Match : DEAD (HMM E-Value=0.73)
Length = 1017
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Frame = +2
Query: 200 RVADVPCD----RKCHPFAAGRVARHV 268
R+ADV + CHP+ +GRV +H+
Sbjct: 503 RIADVLTEWEFSEACHPYTSGRVGQHL 529
>SB_22821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 352 LNILLKKKE*SKATWYLFNLASNDK 278
LN + KKKE + + FNLA++DK
Sbjct: 49 LNFMEKKKEEAGYAMHAFNLAASDK 73
>SB_15946| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 285
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 138 NVNFKFTRHSIEAVAFSCWCPVWQTCRVTVSAIRSPRAVWLA 263
+V F R ++ V F+C P +TC V+A+ + R + L+
Sbjct: 62 DVYFTCHRPHMQDVYFTCHRPTCKTCTSPVTALHARRVLHLS 103
>SB_8992| Best HMM Match : Homeobox (HMM E-Value=1.4e-25)
Length = 156
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 60 YITSA*RERLASALNKIRNRKSIGFLNVNFKFTRHSIEAV 179
Y+T A R +LAS L N+ + F N K+ + + E+V
Sbjct: 104 YLTKADRHQLASMLGLSDNQVKVWFQNRRMKWRQDARESV 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,712,371
Number of Sequences: 59808
Number of extensions: 202292
Number of successful extensions: 663
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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