Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31044
         (374 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein si...    27   4.1  
At5g52220.1 68418.m06482 expressed protein  ; expression support...    27   5.4  
At4g20830.2 68417.m03022 FAD-binding domain-containing protein s...    26   9.4  
At4g20830.1 68417.m03023 FAD-binding domain-containing protein s...    26   9.4  

>At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein
          similar to beta-galactosidase (lactase) from
          Alteromonas haloplanktis [SP|P81650]; contains Pfam
          glycoside hydrolase domains PF02836, PF02837, PF02929,
          PF02930
          Length = 1107

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 96 RTRDAHVTQKLYSSTKGENEYW 31
          R RD HVT + + S +G   YW
Sbjct: 28 RKRDPHVTLRCHESVQGALRYW 49


>At5g52220.1 68418.m06482 expressed protein  ; expression supported
           by MPSS
          Length = 123

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 211 VCHTGHQQ--LNATASMECLVNLKLTFKNPILFLFRILFKADARRSRHAEVI 62
           +CH+   Q     T     LV  K+T K P+L L ++ F   + ++   EV+
Sbjct: 44  LCHSDSSQGTYTFTVGYHELVGSKVTLKKPLLVLKKLQFDEVSGKATELEVV 95


>At4g20830.2 68417.m03022 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 540

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 135 KILYSFYFGFCSKRTRDAHVTQK---LYSSTKGENEYWE 28
           K+LYSF  GF SK  R ++   +   +  +  G N Y E
Sbjct: 460 KVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKE 498


>At4g20830.1 68417.m03023 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 570

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 135 KILYSFYFGFCSKRTRDAHVTQK---LYSSTKGENEYWE 28
           K+LYSF  GF SK  R ++   +   +  +  G N Y E
Sbjct: 460 KVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKE 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,264,838
Number of Sequences: 28952
Number of extensions: 130356
Number of successful extensions: 308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)