Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31043
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_36489| Best HMM Match : WTF (HMM E-Value=1.2)                       28   7.0  
SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031)                    28   7.0  
SB_613| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.0  
SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)                28   7.0  

>SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +1

Query: 433 IFHTIHKVKYL*RISSACRCLL*HGVLFKALAVESCIYNLQICNFYF*LYKT-CFMCQSI 609
           I   ++K + + R+   C C+    +L+K   +   +Y  + C F   LYK  C      
Sbjct: 153 ILRLLYKCECIFRLLYKCECIF--RLLYKCECIFRLLYKCE-CIFRL-LYKCECIFRLLY 208

Query: 610 ICK*FSSQLFKQKVPKHLHFKIDAIFIILYRF 705
            C+     L+K +    L +K + IF +LY+F
Sbjct: 209 KCECIFRLLYKCECIFRLLYKCECIFRLLYKF 240


>SB_36489| Best HMM Match : WTF (HMM E-Value=1.2)
          Length = 1007

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 350 KTNSGSQWCAVCPNNAPNSVK 412
           K  SG++WC+VC  N   ++K
Sbjct: 67  KYRSGTKWCSVCERNGEETLK 87


>SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031)
          Length = 533

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 134 NNTECPFSNLPTAKNDARLIH*KHNNDVKLLLK 36
           NNTE P  N+ +AKN + +     ++++KL LK
Sbjct: 247 NNTEDPLDNIKSAKNISTVTMTTQSSELKLSLK 279


>SB_613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 350 KTNSGSQWCAVCPNNAPNSVK 412
           K  SG++WC+VC  N   ++K
Sbjct: 115 KYRSGTKWCSVCKRNGEETLK 135


>SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 128 TECPFSNLPTAKNDARLIH*KHNNDVKLLLKIILLQHCSIVP 3
           T C F   P +KN    +H K   D+K++ K+ ++Q CS  P
Sbjct: 317 TSCAFCT-PVSKNVVS-VHLKCAGDLKVVKKVSIIQSCSCRP 356


>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
          Length = 398

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 149 SR*FINNTECPFSNLPTAKNDARL 78
           SR   NNT CP    PT++ND  L
Sbjct: 290 SRWLENNTTCPICRKPTSRNDDEL 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,510,442
Number of Sequences: 59808
Number of extensions: 395914
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)