Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31039
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    90   2e-19
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   1.9  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    27   1.9  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   5.9  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 40/56 (71%), Positives = 47/56 (83%)
 Frame = -3

Query: 693 QSSLRTVVAQAALVGVPAPALSAALAFYDGYRSGVLPANLLQAQRDYFGAHTYELL 526
           Q+  R VVAQAA++G+P PA S  L+FYDGYRS VLPANLLQAQRDYFGAHT+ +L
Sbjct: 405 QAGWRRVVAQAAMLGIPVPATSTGLSFYDGYRSAVLPANLLQAQRDYFGAHTFRVL 460



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -2

Query: 508 IHTNWTGHGGKISAST 461
           IH NWTGHGG ISA+T
Sbjct: 474 IHINWTGHGGNISATT 489


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 624 ALAFYDGYRSGVLPANLLQAQRDYFGAHTYELLHNPGQLFTRTGPGMAG 478
           A AFY+  ++ ++  NL QA R  +G   + ++   GQL  ++G    G
Sbjct: 741 APAFYNVLQNTLVAKNLEQANRIAYGKTRWRVVTLSGQLIDKSGTMTGG 789


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 325 SVCGTKFLRNEQNNGMTNAILNECFSE 245
           S CGT+F  N+  N      LN C+ +
Sbjct: 140 SACGTRFFNNDNENTRCYVKLNYCYPD 166


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 127 SIEAR*IECRSPKLKEC*YTSECT 198
           S + R I C +P + +C Y SECT
Sbjct: 53  SSQDRCIICGAPGVSDCYYCSECT 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,170
Number of Sequences: 5004
Number of extensions: 46871
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)