Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31039
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0080 + 644021-645463                                             76   3e-14
11_04_0333 + 16474011-16475478,16475622-16475641                       75   7e-14
08_02_0535 + 18298244-18298486,18299937-18300353,18300680-183007...    29   3.5  

>06_01_0080 + 644021-645463
          Length = 480

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 36/64 (56%), Positives = 44/64 (68%)
 Frame = -3

Query: 693 QSSLRTVVAQAALVGVPAPALSAALAFYDGYRSGVLPANLLQAQRDYFGAHTYELLHNPG 514
           Q++ R VV  A   GV  P +SA+LA++D YR   LPANL+QAQRDYFGAHTYE +  PG
Sbjct: 406 QAAWRRVVCLAINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPG 465

Query: 513 QLFT 502
              T
Sbjct: 466 SFHT 469


>11_04_0333 + 16474011-16475478,16475622-16475641
          Length = 495

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 33/60 (55%), Positives = 44/60 (73%)
 Frame = -3

Query: 693 QSSLRTVVAQAALVGVPAPALSAALAFYDGYRSGVLPANLLQAQRDYFGAHTYELLHNPG 514
           Q++ R VVA+A   G+  P +SA+L+++D YR   LPANL+QAQRD FGAHTYE +  PG
Sbjct: 431 QNAWRWVVARAVEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPG 490


>08_02_0535 +
           18298244-18298486,18299937-18300353,18300680-18300757,
           18300893-18301045,18301131-18301239,18301321-18301487,
           18301571-18301954
          Length = 516

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 636 ALSAALAFYDGYRSGVLPAN 577
           AL+ A+ F++G RSG LPAN
Sbjct: 44  ALAKAILFFEGQRSGRLPAN 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,910,491
Number of Sequences: 37544
Number of extensions: 279111
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)