Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31038
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 31 0.24
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 28 1.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.0
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu... 26 5.3
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 5.3
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 26 7.0
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 9.2
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 25 9.2
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 9.2
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 9.2
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.7 bits (66), Expect = 0.24
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +2
Query: 347 KFSVLFEIEEVDEENFPKNDSQGEEEPLSDKASAEEVASKRNQNEGD---SLNDMESLE 514
KF+ L +EE D++ + +GE+E ++ E+ S ++ EG SL D ESLE
Sbjct: 256 KFADLSVLEEDDDDEDEDEELEGEKEEEEEEKEKPEI-SNYDETEGKVNFSLEDSESLE 313
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +2
Query: 365 EIEEVDEE-NFPKNDSQGEEEPLSDKASAEEVASKRNQNEGDS----LNDMESLEK 517
EIE+ DEE N + + + +S ++S EE K+ + EG+ L D E ++K
Sbjct: 38 EIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVEKILRDEERIKK 93
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 535 YYDLLEFLQAFHVI*RISLILIPFR 461
YYD LEFL + H + +I IPF+
Sbjct: 864 YYDPLEFLISIHSCFHLGVIPIPFQ 888
>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 241
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/78 (24%), Positives = 30/78 (38%)
Frame = +1
Query: 511 GEIPASHSNDQETPSPSTSGDRDVGATSIGETLKRINADLLVEFPAKKPKPELFTVDKGP 690
GE+P +E + +VGA K ++ D L E K + +L V
Sbjct: 138 GEVPGYSDEGEEARKDKRKNESEVGAGKKKAKAKPVDMDKLAEGLQKLQEDDLLQV---- 193
Query: 691 KWYSIANEMVTPPIITKN 744
+ NE TP + +N
Sbjct: 194 --VQMVNENKTPDMYVRN 209
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 368 IEEVDEENFPKNDSQGEEEPLSDKASAEEVASKRNQNEGDSLN 496
+EEVDE++ S E EP+ + E SKR ++ + N
Sbjct: 178 VEEVDEKSLKNESSSDEFEPVVPE-QLETPISKRRRSRSSAKN 219
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 371 EEVDEENFPKNDSQGEEEPL-SDKASAEEVASKRNQNEGD 487
EE +EE+ +++S EE+ L S A +V KR ++E +
Sbjct: 154 EESEEESESEDNSASEEDELDSAPAKKAQVKKKRTKDESE 193
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 407 SQGEEEPLSDKASAEEVASKRNQN 478
+QGE EPL A ++ +A +RN +
Sbjct: 701 NQGEREPLLAPADSDTMAGRRNSS 724
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 562 YLVKESPDRYYDLLEFLQA 506
YL+ +SP+ Y D EFL A
Sbjct: 387 YLLSKSPNGYVDTFEFLDA 405
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 365 EIEEVDEENFPKNDSQG--EEEPLSDKASAEEV 457
EI EVD+EN +N SQ ++ P D+ E +
Sbjct: 25 EITEVDDENVNENKSQEMIQDIPARDREEIENI 57
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 359 LFEIEEVDEENFPKNDSQGEEEPLSDKASAEEVASKRNQN 478
L E+ + E PK D+ E+P+ D+ E++ SK N
Sbjct: 1190 LLEVNPISGETIPKFDASSFEDPVCDE-FFEDIWSKVASN 1228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,139
Number of Sequences: 5004
Number of extensions: 57489
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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