Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31038
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 33 0.19
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 33 0.34
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 29 3.1
04_04_0569 + 26293891-26294931 29 5.5
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724... 28 7.2
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 28 9.6
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244... 28 9.6
01_06_0852 + 32463784-32463834,32463957-32464628,32465515-324656... 28 9.6
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 499 HGKLGEIPASHSNDQETPSPSTSGDRDVGATSIGETLKRINADLLVEFPAKKPKPELFTV 678
H + E+ A H + E PS TSG + + + I TLK + + + P K P T
Sbjct: 430 HPRFAELKAFHGIEDEKPSSRTSGPQKMASGLISITLKCVGPSMGEKQPLTKKLPPATTG 489
Query: 679 DKGPKWY 699
P+++
Sbjct: 490 CPMPQFF 496
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +2
Query: 365 EIEEVDEENFPKNDSQGEEEPLSDKASAEEVASKRNQNEGDSLNDMESLEKFQQV 529
E E+ D+E K D++ E+E L E+ K ++NE + L + E +K +++
Sbjct: 220 EKEKEDKEEETKKDNEKEKEQLMGTDEKEKEKEKEDENEEEKLEEEEKKDKEEKL 274
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 365 EIEEVDEENFPKNDSQGEEEPLSDKASAEEVASKRNQNEGDSLNDME 505
E+EE+D+ + + + EEE DK E+ A + ++E + D++
Sbjct: 134 ELEELDDVDDEEESEEEEEEEEEDKEGLEDKAGNQVEDEFFKIKDLD 180
>04_04_0569 + 26293891-26294931
Length = 346
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 526 SHSNDQETPSPSTSGDRDVGATSIGETLKRINADLLVEFPAKKPKP--ELFTVDKGPKWY 699
S S+ Q +PSPS +V A + E K+ D + +P+ +P P L+ DKG WY
Sbjct: 2 SSSSVQTSPSPS----HEVDAETDEELYKQFT-DSVSSWPSSEPMPFLPLYRHDKG--WY 54
Query: 700 SIANEMV 720
S MV
Sbjct: 55 SSLMPMV 61
>06_03_0500 +
21470681-21470952,21471049-21471089,21472322-21472485,
21472577-21472679,21472806-21472975,21473766-21474239
Length = 407
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 371 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKRNQNEGD 487
EEV+EE + + +G + + +AEEVA +R G+
Sbjct: 29 EEVEEEEEEEEEEEGADATAAAADAAEEVAEERRGGGGE 67
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 398 KNDSQGEEEPLSDKASAEEVASKRNQNEGDSLNDMES 508
+N + E+P D+++ E + +++QN GD L +E+
Sbjct: 327 RNSNYSTEDPTRDRSNQLENSLEKSQNHGDVLQIVEN 363
>04_03_0937 +
20923705-20923833,20924001-20924012,20924413-20924473,
20924523-20924749,20924859-20925104,20925645-20925657,
20927681-20928302,20928320-20928949,20928960-20929224
Length = 734
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 371 EEVDEENFPKNDSQGEEEPLSDKASAEEVASKRNQNEGDSLNDMESLEK 517
E DE+N ++++QG ++ +A+ E+ KR E ++ E +K
Sbjct: 115 EVQDEDNAVEHENQGSHITITSRANGEKNMRKRQSEEEEAKKREEEAKK 163
>01_06_0852 +
32463784-32463834,32463957-32464628,32465515-32465627,
32465999-32466261,32466803-32466924,32467176-32467253,
32467353-32467409,32467590-32467658,32467903-32467947,
32468303-32468398
Length = 521
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +2
Query: 377 VDEENFPKNDSQGEEEPLSDKASAEEVASKRNQNEGDSLNDMESLEKFQQVIVTIRRLL 553
VD N+ ++E +DK A+ + + ++++GD D E EK ++ ++++ +
Sbjct: 446 VDIGEHSYNEDSDDDEEDADKVVAQPESLEDDEDDGDDAEDAEGKEKSKKDQLSLKEAI 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,860
Number of Sequences: 37544
Number of extensions: 310485
Number of successful extensions: 1005
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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