Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31038
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.45 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   1.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   1.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   1.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 47  ITYVLQNVKKNYLKRTLTNHGKLKITDS*STVLFHHL*SPYSE 175
           IT VL+N+  NY    L  HGK   T   + +L   +  P SE
Sbjct: 37  ITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSM-GPVSE 78


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 87  REHLLTMEN*KLLIVNQQYYFITFDHHILNIN-KKIKYNTKSSGSQKIRSGLNI 245
           RE++L + N    +VN  + F   +  I+N N  ++  NT+       R+   I
Sbjct: 375 REYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFKI 428


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 87  REHLLTMEN*KLLIVNQQYYFITFDHHILNIN-KKIKYNTKSSGSQKIRSGLNI 245
           RE++L + N    +VN  + F   +  I+N N  ++  NT+       R+   I
Sbjct: 375 REYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFKI 428


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 87  REHLLTMEN*KLLIVNQQYYFITFDHHILNIN-KKIKYNTKSSGSQKIRSGLNI 245
           RE++L + N    +VN  + F   +  I+N N  ++  NT+       R+   I
Sbjct: 375 REYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELILNTRCENPDNDRTPFKI 428


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 141 YYFITFDHHILNINKKIKYNTKSSGSQKIRSGLN 242
           YY+     H++N  K ++   K      +RS  N
Sbjct: 229 YYYSQIVSHVVNHEKALREQAKKMNVDSLRSNAN 262


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 37  YFNNYIRFTKCKKELPKENT 96
           Y  NY +F   +K L K+NT
Sbjct: 446 YNKNYTKFCSTEKRLTKQNT 465


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 506  FPCHLKNLPHFDSVSMQLLRH*PYH 432
            + C+++N    D+V+ QL+ H P H
Sbjct: 1344 YSCYVENTFGHDTVTHQLIVHAPPH 1368


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 344  YKFSVLFEIEEVDEENFPKNDSQGEEEPLSDKAS--AEEVASKRNQNEGDSLNDMESLE 514
            Y++SV       D ++   ND  G +  L  K        A   NQ EGDSLN  +SL+
Sbjct: 1590 YRYSVRGLCGNFDHDS--TNDFVGPKNCLFRKPEHFVASYALISNQCEGDSLNVAKSLQ 1646


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
          precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 34 LYFNNYIRFTKCKKELPK 87
          LYFN+ +RF +   EL K
Sbjct: 25 LYFNSLVRFRRFTIELDK 42


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 452 EVASKRNQNEGDSLNDMESLEKFQQ 526
           E + +  +N GD  N+ E  E+F+Q
Sbjct: 468 ENSRRAMENLGDGRNNKEDSEEFRQ 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,040
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)