Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31037
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.83 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    25   1.1  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    25   1.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.9  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    23   3.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.7  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 145 FPQLEMSSHSRRKPCFVLLLYVLFCISLISAPAAKAFSLP 26
           +P +      RR+P F +   +L CI LI++ A   F +P
Sbjct: 200 YPDITYEIRLRRRPMFYVFNLILPCI-LINSVALLVFYVP 238


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR AK
Sbjct: 226 RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAK 260



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 30  RLRREAKPEA-EPGNNRPVYIPQPRPPHPRLRREAE 64



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 58  RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 92



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 86  RLRREAELEA-EPGNNRPVYISQPRPPHPRLRREAE 120



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 114 RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 148



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 142 RLRREAELEA-EPGNNRPVYISQPRPPHPRLRREAE 176



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 170 RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 204



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 198 RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 232


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR AK
Sbjct: 114 RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAK 148



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 2   RLRREAKPEA-EPGNNRPVYIPQPRPPHPRLRREAE 36



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 30  RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 64



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 58  RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 92



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 86  RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 120



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 142 RLRREAKPEA-EPGNNRPVYIPQPRPPHPRLRREAE 176


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 170 FRSWGWL*AGNAVRYHLCRRKGEIRSTRVNIGTIPGAGGTQRLPRYVGKS 319
           F  WG L          CR + EIRST V  GT     G + +P   G++
Sbjct: 509 FHQWGIL----VYEPSACRPRHEIRSTDVIPGTQEHVCGVKGIPCSWGRA 554


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 31  RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 65



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 59  RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 93



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 87  RLRREAEPEA-EPGNNRPVYIPQPRPPHPRLRREAE 121


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 31  RLRREAKPEA-EPGNNRPIYIPQPRPPHPRLRREAE 65



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 473 KLAKQAVNQAYEPPSNRACSLRSPPSMEPLLRRTAK 580
           +L ++A  +A EP +NR   +  P    P LRR A+
Sbjct: 59  RLRREAEPKA-EPGNNRPIYIPQPRPPHPRLRREAE 93


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 289 GASGSGDGANVDSG 248
           GASGSG   N+ SG
Sbjct: 599 GASGSGSAENLSSG 612


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 51  GADIKEMQNNTYSSNTKQ 104
           GA++KE+  NT+  N  Q
Sbjct: 402 GANVKELIRNTHCVNNNQ 419


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 350  SFLSTRSPLLSTCQRIWEDAGC 285
            +FLS  S  L     +W D GC
Sbjct: 1506 TFLSPNSTTLVLRLHVWPDNGC 1527


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 350  SFLSTRSPLLSTCQRIWEDAGC 285
            +FLS  S  L     +W D GC
Sbjct: 1502 TFLSPNSTTLVLRLHVWPDNGC 1523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,955
Number of Sequences: 438
Number of extensions: 5839
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)