Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31036
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    27   2.1  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    26   4.9  
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch...    26   4.9  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   6.5  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   8.6  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   8.6  

>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 535 RDDHQMWSNDLPIQSDIQDMLGPEQGYEGLYGTRPSFHQQ 654
           R+D+    ND   +S ++  +     YE  Y +R S+HQ+
Sbjct: 5   RNDYHYDGNDHQYRSPLKSNVDQNSFYESSYRSRQSYHQR 44


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 736 ASPMSMSIPKPLPISSPCIESIGIDRS 656
           +SP + S+  P P  +P + +IG+D S
Sbjct: 71  SSPSAFSVQNPNPNDAPFVGNIGLDAS 97


>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 461 LFRMSEDKPHDYKKRLLWN*LIRCSATI 544
           L  M +D  H++ K ++WN   +   TI
Sbjct: 174 LLEMDDDDEHEFSKSIVWNYFEQAETTI 201


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 711 QNRYRSQAPASNLSVLIVALLVKGWSGPIQALVTLLWPEHVL 586
           Q+RY +Q  +S+L  + ++    G +  I  ++  +W  HV+
Sbjct: 608 QSRYNNQYDSSSLEFVRLSGCHDGLASSISRIIRNVWKNHVI 649


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 466 PHVRRQAPRLQEETPMELTNSLFRDDH 546
           PH+  +  RL EET ++  N+ FR D+
Sbjct: 266 PHIASKLLRLPEETFVKFLNASFRLDY 292


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 386 GFDHFCSFFLYGQFTEHAGGNALNIFNLIEQQL 288
           G   FCS    G++   AGG+ L+++   + QL
Sbjct: 225 GIPLFCSIQYQGKYIMCAGGSFLSVYTTPDMQL 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,014
Number of Sequences: 5004
Number of extensions: 66088
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)