Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31036
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 32 0.55
02_02_0434 + 10196427-10196606,10197132-10197152,10197816-101978... 31 0.73
12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839... 31 1.3
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842... 30 1.7
07_03_1398 - 26271034-26271131,26271314-26271425,26271750-262717... 30 2.2
07_03_0394 - 17633753-17636788 30 2.2
03_02_0016 + 4981845-4982165 30 2.2
01_01_1093 + 8627731-8627889,8627934-8627996,8628671-8628721 30 2.2
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 29 2.9
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 29 2.9
05_04_0228 - 19224901-19224991,19225095-19225219,19225293-192254... 29 3.9
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961... 29 3.9
08_01_0429 + 3767486-3768022,3768247-3768523,3769132-3769364,377... 29 5.1
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.1
03_01_0119 + 935554-937161 29 5.1
02_05_0683 + 30877731-30878243 29 5.1
12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569 28 6.8
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 28 6.8
04_03_0372 + 15068405-15070000 28 6.8
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 28 6.8
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 243 QQTTIRQQNVIPIFVQLLFNEIENIQRVAAGVLCELAVEKEGAEMIEAEG 392
Q+ + + + + L +E E I+RVAAG + LA+ + ++I A+G
Sbjct: 667 QEKIVEAGGLTSLLMLLRSSEDETIRRVAAGAIANLAMNETNQDLIMAQG 716
>02_02_0434 +
10196427-10196606,10197132-10197152,10197816-10197877,
10198784-10199036
Length = 171
Score = 31.5 bits (68), Expect = 0.73
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 124 QRQRSSSGGGANTAYADGVRMEEIVEGAVGALHILAKESHNRQLSDSRTSFRYS 285
+R + GGG ++ DG + V+G +LA+ +N LS TSFR S
Sbjct: 36 RRHQQLGGGGGVSSVGDGF-VPTAVQGMYDESKLLAEAENNTYLSSGSTSFRAS 88
>12_01_1010 -
10280424-10282003,10283359-10283668,10283749-10283939,
10283967-10284279
Length = 797
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/81 (24%), Positives = 40/81 (49%)
Frame = +1
Query: 22 VRNLALCSANYAPLREHGAVHHLVRLLMRAYNDTQRQRSSSGGGANTAYADGVRMEEIVE 201
+ NL C N + E+G + L+RLL+ +DTQ ++ G ++ V++ +V
Sbjct: 243 LENLESCEKNVRQMAENGRLQPLLRLLLEGSSDTQLSMAAHLG--ELVLSNDVKV--LVA 298
Query: 202 GAVGALHILAKESHNRQLSDS 264
G+ + +S NR+ ++
Sbjct: 299 QTAGSTLVNIMKSGNREAREA 319
>01_01_1069 -
8420454-8420670,8421272-8421447,8421556-8421738,
8421885-8421980,8422064-8422192,8422266-8422445,
8422524-8422634,8422714-8422869,8422983-8423078,
8423160-8423327,8423402-8423642,8423724-8423851,
8424042-8424134,8424214-8424309,8424431-8424523,
8424741-8424850,8424999-8425134,8425215-8425315,
8426029-8426152,8426237-8426411,8426523-8426681,
8427423-8427536,8427669-8427848,8428926-8429005
Length = 1113
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 521 VNSIGVSSCNRGACLRTCGTERLQRTW 441
VN I S N+ C+ TCG +RL + W
Sbjct: 432 VNDIAFSRPNKQLCVVTCGDDRLIKVW 458
>07_03_1398 -
26271034-26271131,26271314-26271425,26271750-26271793,
26272158-26272485,26272569-26272982
Length = 331
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 43 SANYAPLREHGAVHHLVRLLMRAYNDTQRQRSSSGGGANTAYADGVRMEEI-VEGAV 210
SA + P+R H H + ++AY+ ++ + SSG TA A V +E +E A+
Sbjct: 117 SAAFLPVRRHARAHFGPPVDVKAYDASRVRIGSSGKETTTATAAAVEVEVTRIENAI 173
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 29.9 bits (64), Expect = 2.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -2
Query: 256 IVVCCGFLWLKYARLQRRLPRSP 188
I +C GF W+++ R + ++P +P
Sbjct: 974 IALCLGFFWMRHPRFRHKVPSAP 996
>03_02_0016 + 4981845-4982165
Length = 106
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +1
Query: 73 GAVHHLVRLLMRAYNDTQRQRSSSGGGANTAYADGVRMEEIVEGAVGALHI------LAK 234
GAVH R +M+A +++R+R + GGGA + ++ +V LH+ L +
Sbjct: 22 GAVH---RRVMKAKAESRRRRRAGGGGAVVSVGGAHPVQLLVARLPHLLHLLQVSEPLLE 78
Query: 235 ESHNRQLSDSR 267
ES+ R + D R
Sbjct: 79 ESYGRCVDDRR 89
>01_01_1093 + 8627731-8627889,8627934-8627996,8628671-8628721
Length = 90
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 654 LLVKGWSGPIQALVTLLWPEHVLYIG 577
LLV WSG IQ L +W +H++ IG
Sbjct: 42 LLVLVWSGMIQDLQAGMWIDHIVMIG 67
>07_03_0603 - 19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 264 QNVIPIFVQLLFNEIENIQRVAAGVLCELAVEKEGAEMIEAEGQPLRSLNCCIQEMK 434
Q V +F +LL ++ E VA +L L +EG ++ A + +R L C +QE++
Sbjct: 959 QAVEIVFQELLRSKTEGFF-VACDILKRLCESEEGHKIARALKRHIRRLGCLVQELE 1014
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 676 SIGIDRSLVGERMVWSHTGPRNPALARACPVYRIVSEG 563
S+ + RS ++ +W HT R A RA P+ +IVS G
Sbjct: 525 SLVLQRSNPMKQKLWKHTQARQLANGRAVPLLQIVSFG 562
>05_04_0228 -
19224901-19224991,19225095-19225219,19225293-19225410,
19225554-19225618,19225760-19225839,19225942-19226005,
19227341-19227480,19227571-19227694,19227781-19227840,
19227922-19227990,19228139-19228288,19229182-19229289,
19229573-19229648,19229960-19230054,19231729-19231803,
19231923-19232043,19232136-19232308,19232647-19232813,
19232944-19233301
Length = 752
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 246 QTTIRQQNVIPIFVQLLFNEIENIQRVAAGVLCELAVEKE 365
+T +R + IP V+LL ++ +QR AAG L LA + +
Sbjct: 229 KTCVRIEGGIPPLVELLESQDLKVQRAAAGALRTLAFKND 268
>03_06_0570 -
34794678-34795115,34795339-34795920,34796008-34796146,
34796261-34796402,34796504-34796621,34796713-34796820,
34796894-34796968,34797774-34798003,34798086-34798388,
34798949-34799130,34800288-34800371,34800799-34801391
Length = 997
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 447 TLQPFCSACPKTSPTITRRDSYGID*F 527
T+Q FC C + S + RRD YG + F
Sbjct: 188 TVQRFCQQCSRKSYIVKRRDYYGSNDF 214
>08_01_0429 +
3767486-3768022,3768247-3768523,3769132-3769364,
3773221-3773625,3773717-3773755
Length = 496
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 133 RSSSGGGA--NTAYADGVRMEEIVEGAVGALHILAKESHNRQLSDSRTSFRYSCNCCSM 303
R SGGG+ N +A +EE+V G ++L + ++ R L R CCS+
Sbjct: 36 RGGSGGGSLHNAVWA----VEEVVAGVPPTRYVLLRGAYGRYLGSPDAPDREREGCCSL 90
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.1
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 28 NLALCSANYAPLREHGAVHHLVRLLMRAYNDTQRQRSSSGGGANTAYADGVRMEEIVE-G 204
NL++C N A + E GA+ LV L A + R+ ++ + DG I G
Sbjct: 131 NLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAAC-ALLRLSQLDGSAAASIGRAG 189
Query: 205 AVGALHILAKESHNRQLSDSRTSFRYSCN 291
A+ L L + R D+ T+ C+
Sbjct: 190 AIPLLVSLLETGGARGKKDAATALYALCS 218
>03_01_0119 + 935554-937161
Length = 535
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +3
Query: 213 SLAYFSQRKPQQTTIRQQNVIPIFVQLLFNEIENIQRVAAGVLCELAVEKEGAEMIEAEG 392
++ S + + + +P+ V++L + + VAA + L A + +G
Sbjct: 398 AICRISTTTDMKRVVGEHGCVPLLVRMLDAKSNGAREVAAQAMASLVGYPPNAREVRRDG 457
Query: 393 QPLRSLNCCIQEMKGSP-RTLQPFCSAC 473
+S+ C +Q + SP T + + AC
Sbjct: 458 ---KSVPCLVQLLDPSPANTAKKYAIAC 482
>02_05_0683 + 30877731-30878243
Length = 170
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 157 WLHRPKSCVVSGCRCRHASAGAPDDERR-RVPATERSWRNR 38
WL CVV G R R A+A RR AT R W+ R
Sbjct: 51 WLDPAGGCVVGGGRGRGAAARQGRQHRRNEAVATVRRWQRR 91
>12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569
Length = 411
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -2
Query: 124 GCRCRHASAGAPDDERRR--VPATERSW 47
G RHA+ G ++RRR VPAT + W
Sbjct: 36 GAAARHAAGGGRTEQRRREAVPATFQRW 63
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/65 (30%), Positives = 25/65 (38%)
Frame = -2
Query: 208 RRLPRSPPYERRQRKQYWLHRPKSCVVSGCRCRHASAGAPDDERRRVPATERSWRNRAPG 29
++LPR P R RK RP S R A+ APD T + + A G
Sbjct: 434 KKLPRRPSGLARLRKPLG-RRPDSAGPRSPSVRRAACQAPDPTPPEATTTSEAAHDEAAG 492
Query: 28 CVLSP 14
L P
Sbjct: 493 APLGP 497
>04_03_0372 + 15068405-15070000
Length = 531
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 411 NCCIQEMKGSPRTLQPFCSA-CPKTSPTITRRD 506
NCC++ G R L C A TSP+ +RRD
Sbjct: 451 NCCVRSPDGLVRALVMTCHAGWSATSPSCSRRD 483
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/81 (20%), Positives = 35/81 (43%)
Frame = -2
Query: 280 IGMTFCCRIVVCCGFLWLKYARLQRRLPRSPPYERRQRKQYWLHRPKSCVVSGCRCRHAS 101
+ + FC ++ G K+ + ++ + + ER +R + C +S + + S
Sbjct: 240 VHVVFCVTTLLLGGAKMKKWEKWEKEIQQGRTKERPKRPGWMKFIVVRCAISFLKQFYDS 299
Query: 100 AGAPDDERRRVPATERSWRNR 38
G PD + R +R + NR
Sbjct: 300 VGKPDYQVLRSAFVQRHYPNR 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,836,241
Number of Sequences: 37544
Number of extensions: 516201
Number of successful extensions: 2007
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2007
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -