Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31034
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q88WJ7 Cluster: UPF0122 protein lp_1634; n=43; Bacilli|...    39   0.099
UniRef50_Q2JU59 Cluster: ISSoc4, transposase orfAB; n=18; Synech...    35   1.6  
UniRef50_A5ZEP0 Cluster: Putative uncharacterized protein; n=2; ...    34   3.7  
UniRef50_Q877K7 Cluster: ISPsy8, transposase OrfA; n=2; Pseudomo...    33   6.5  
UniRef50_O05290 Cluster: Probable UPF0122 protein; n=3; Mycoplas...    33   6.5  
UniRef50_Q0AUU0 Cluster: Transposase; n=1; Syntrophomonas wolfei...    33   8.6  
UniRef50_A0AGR8 Cluster: Complete genome; n=1; Listeria welshime...    33   8.6  

>UniRef50_Q88WJ7 Cluster: UPF0122 protein lp_1634; n=43;
           Bacilli|Rep: UPF0122 protein lp_1634 - Lactobacillus
           plantarum
          Length = 115

 Score = 39.1 bits (87), Expect = 0.099
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
 Frame = +3

Query: 72  YKRYDPLIL---KTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKKRLHN 242
           ++ Y+PL+    K  I+ Y   + SL EIA +F++S+  ++ ++ RT K   G++ +LH 
Sbjct: 13  FEFYEPLLTNKQKAYIQLYYADDYSLGEIAAEFSVSRQAVYDNIKRTEKILEGYEAKLH- 71

Query: 243 KY*YFSEWGYPLDS 284
            Y  F E  + +D+
Sbjct: 72  LYHDFVERNHEVDA 85


>UniRef50_Q2JU59 Cluster: ISSoc4, transposase orfAB; n=18;
           Synechococcus|Rep: ISSoc4, transposase orfAB -
           Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria
           bacteriumYellowstone A-Prime)
          Length = 315

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 108 IEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKKRLHNK 245
           + AY+ GN S+ ++AK+F ++K  +HR V +  ++Q    K+   K
Sbjct: 13  VAAYQAGNTSIRQVAKRFMVTKRTVHRWVRQYQQTQDLAPKKAGTK 58


>UniRef50_A5ZEP0 Cluster: Putative uncharacterized protein; n=2;
           Bacteroides|Rep: Putative uncharacterized protein -
           Bacteroides caccae ATCC 43185
          Length = 169

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +3

Query: 33  DMPSVCVSKSAKPYKRYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMK 209
           D   +C+ K+ K    Y+  IL    EA  I N+   E+A++ N+S + +H+++ + ++
Sbjct: 100 DSRILCIRKAMKKLTPYNYYIL----EACYIHNKKYKEVAEELNVSVAAIHKNIVKALR 154


>UniRef50_Q877K7 Cluster: ISPsy8, transposase OrfA; n=2; Pseudomonas
           syringae group|Rep: ISPsy8, transposase OrfA -
           Pseudomonas syringae pv. tomato
          Length = 171

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 78  RYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQG--GHKK 230
           +Y      T ++AY  GN    +++ QF+I  S+L R V    KS G  GH+K
Sbjct: 3   KYSEQFKLTVVKAYLAGNIGFRKVSSQFSIDSSLLRRWVA-NYKSHGHTGHRK 54


>UniRef50_O05290 Cluster: Probable UPF0122 protein; n=3;
           Mycoplasma|Rep: Probable UPF0122 protein - Mycoplasma
           mycoides
          Length = 113

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +3

Query: 51  VSKSAKPYKRYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKK 230
           +S+  K YK       K   E Y   + SL EIA +FNISK+ ++  +++T K     + 
Sbjct: 14  LSELFKIYKELLTDKQKQYFELYIDEDLSLSEIADEFNISKTAVYDSISKTSKLLFSLET 73

Query: 231 RLHNK 245
           +LH K
Sbjct: 74  KLHLK 78


>UniRef50_Q0AUU0 Cluster: Transposase; n=1; Syntrophomonas wolfei
           subsp. wolfei str. Goettingen|Rep: Transposase -
           Syntrophomonas wolfei subsp. wolfei (strain Goettingen)
          Length = 92

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 75  KRYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGH 224
           K Y+    K  ++ Y  GN S  E+++Q++I+ S + + V R   +Q  H
Sbjct: 4   KHYEENFKKQIVKIYNQGNHSYRELSEQYDIAPSTVRQWVMRYNNTQSFH 53


>UniRef50_A0AGR8 Cluster: Complete genome; n=1; Listeria welshimeri
           serovar 6b str. SLCC5334|Rep: Complete genome - Listeria
           welshimeri serovar 6b (strain ATCC 35897 / DSM 20650
           /SLCC5334)
          Length = 188

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 57  KSAKPYKRYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHV 194
           K  +P K+ D   +K  +  Y   NR++ +IAK  N+S+  +++H+
Sbjct: 136 KLGRPQKQID---IKKIVTLYTTDNRTVTDIAKLMNLSRPTIYKHL 178


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,292,284
Number of Sequences: 1657284
Number of extensions: 12044411
Number of successful extensions: 22701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22696
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)