Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31034
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   1.9  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    27   2.5  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   7.8  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 611  SGLVGLMGMKLIIINKEICPGWHYFVLN*SI*FHHKVII 495
            SGLVG +   + ++ K++ PG   F LN ++ F   V++
Sbjct: 1128 SGLVGAIAGLIALLQKDLSPGVVGFSLNQAVIFSSSVLL 1166


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -1

Query: 326 NSSQKSHYYY-----E*VIRIKWISPL*KILIFIM*SFFVSTLRFHCSCYMSVQNRLTYI 162
           N S+K++ Y+     E + R+K ++P    L+  +   F   +   CS YM++Q  + Y+
Sbjct: 239 NKSEKTNKYHTEWNLEHIPRLKLVTPA---LMRPIRMLFTQPIVILCSTYMAIQYGILYL 295

Query: 161 KLLSY 147
            L +Y
Sbjct: 296 VLTTY 300


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 678 LVVALVNPSFKLNI*QNWISPIQRTSWVNGDEI 580
           L V L +  F L I ++W S +    WV  ++I
Sbjct: 418 LPVGLWDNDFSLEILKSWFSLVNEDGWVGREQI 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,652
Number of Sequences: 5004
Number of extensions: 54561
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)