Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31034
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profi...    30   1.7  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    28   5.0  
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    28   5.0  
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa...    28   5.0  
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t...    27   8.8  
At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5) ...    27   8.8  

>At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profile
           PF05285: SDA1
          Length = 698

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 178 TDLLILNCLAISTKDLFPIS*ASIAVFNIKGSYLL*GFALF-DTQTLGISKIRK 20
           TDLL  +CLA+ +   + ++ + I + N K   +    ALF D QTLG   +RK
Sbjct: 22  TDLLRTSCLAMPSGLRYQVAQSLILLMNRKSLVIEDLLALFLDIQTLGDKNLRK 75


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 247 YLLCNLFLCPP*DFIVLVTCL 185
           Y  C  ++CPP DF+V   CL
Sbjct: 534 YSSCPFYICPPCDFVVHQKCL 554


>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 238 CNLFLCPP*DFIVLVTCL 185
           C L++CPP DF++  +C+
Sbjct: 294 CPLYMCPPCDFVIHKSCI 311


>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1280

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 352 ITYLV*IILRLKASFIYIFLFYCQFIVDCTH 444
           +  L+ ++ ++ + F+YI  FY + +VDC H
Sbjct: 839 VVQLLLVLSKMDSVFVYIPEFYLESLVDCFH 869


>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor CysEP GI:2944446 from
           [Ricinus communis]
          Length = 361

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 132 RSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKKRLHNKY 248
           RSL E AK+FN+ K  + +H+  T K    +K +L NK+
Sbjct: 49  RSLEEKAKRFNVFKHNV-KHIHETNKKDKSYKLKL-NKF 85


>At1g44100.1 68414.m05094 amino acid permease 5, putative (AAP5)
           nearly identical to amino acid permease (AAP5) GI:608673
           from [Arabidopsis thaliana]
          Length = 480

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 290 VIRIKWISPL*KILIFIM*SFFVSTLRFHCSCYMS 186
           V +I WI     +L+F   +F+ STL   CSCY S
Sbjct: 55  VAQIGWIGGPVAMLLFSFVTFYTSTLL--CSCYRS 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,440,555
Number of Sequences: 28952
Number of extensions: 259153
Number of successful extensions: 503
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)