Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31030
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   2.0  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   4.5  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   6.0  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    24   6.0  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    24   7.9  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    24   7.9  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   7.9  

>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +1

Query: 52  WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 159
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 280 KQKRSDPGACRERVMFSITSWRGGYHGSSSQ 188
           ++  S P   R+RV FS+TS  G     SSQ
Sbjct: 70  RRANSTPEESRKRVSFSLTSNDGAKSDRSSQ 100


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -2

Query: 230 HHLMAWGLPWQQQSTVTQC 174
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 283 IKQKRSDPGACRERVMFSITS 221
           +KQK SD  +C+ER    +TS
Sbjct: 302 LKQKLSDRKSCKERESTDVTS 322


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +1

Query: 31  GRRCCNIWHWGSVDSISGSRARFQLSGNSG 120
           G  C N+W     + + G R  + + G  G
Sbjct: 56  GEICFNVWDTAGQEKLGGLRDGYYIQGQCG 85


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = +2

Query: 59  GGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP*GDAKH 238
           G L+TP V PV+                    G    GSI++Q + A  V P P   +K 
Sbjct: 630 GALVTPSVPPVIATVSKTNTTNTGVQQRGNV-GVTTTGSILTQSSPALPVQPVPLAYSKP 688

Query: 239 HPFSTCS 259
            P +  S
Sbjct: 689 APTTKSS 695


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 31  GRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 135
           G R C    W S+D +S S A  Q  G      +R
Sbjct: 287 GGRYCETVGWLSIDGLSASNATRQYVGRPVTNETR 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,186
Number of Sequences: 5004
Number of extensions: 24066
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)