Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31030
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0711 + 22404710-22404824,22405726-22406288,22406386-224065... 28 2.4
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622 28 2.4
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 4.1
09_04_0269 + 16265191-16265472,16265574-16266149 27 4.1
04_04_1080 - 30674122-30674204,30674842-30674913,30675261-306753... 27 4.1
01_07_0172 + 41704905-41706170 27 5.5
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168 26 7.2
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 26 7.2
12_02_0315 - 17417161-17417401,17419426-17419616 26 9.6
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029 26 9.6
>12_02_0711 +
22404710-22404824,22405726-22406288,22406386-22406547,
22406664-22407257
Length = 477
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 152 YGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTCSRIGPF 274
Y + +AG+ L A + AP GD + P I PF
Sbjct: 114 YFDYIAGTSTGGLITAMLAAPGAGGDGRRRPLFAAKEICPF 154
>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
Length = 66
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = +1
Query: 94 RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 201
R +G+K RCC S R+ + R + C+ CCC
Sbjct: 17 RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 82 GSRARFQLSGNSGRKHSRCCTS 147
GSRA F+ NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 77 MESTDPQCHILQHRRPRLPL 18
M T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176
>04_04_1080 -
30674122-30674204,30674842-30674913,30675261-30675324,
30676358-30676394,30676562-30676675,30676791-30677002,
30677180-30677335,30677556-30678443
Length = 541
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -2
Query: 302 KCILIPNKTEKVRSWSMSRTGDV*HHLMAWGLPWQQQSTV 183
+C+ + R W S+ + HH WGL +Q V
Sbjct: 314 RCVYTSTTLHEYRGWD-SKAANTQHHRFTWGLRSMEQHAV 352
>01_07_0172 + 41704905-41706170
Length = 421
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/45 (22%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -3
Query: 343 FFFLHRIDKFIKNLNAF*FQIKQKRSDPGAC-RERVMFSITSWRG 212
++ L + + + L F++++++ + C ++R +FS+++WRG
Sbjct: 373 YYALLQARRVAQGLGCDGFKVREEKGNFFLCWQDRALFSVSAWRG 417
>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
Length = 536
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 192 LLLPW*PPRHEVMLNITRSRHAPGS 266
L P PPRH L+ +R+APGS
Sbjct: 195 LFRPRSPPRHGASLDAEFTRYAPGS 219
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 61 GSVDSISGSRARFQLSGNSGRKHSRCCTSI-LRKFSG 168
GS DS+ G + R + N K C T I LRK SG
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSG 704
>12_02_0315 - 17417161-17417401,17419426-17419616
Length = 143
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 43 CNIWHWGSVDSISGSRARFQLSGNSGRKHSRC 138
C IW ++ ++ G+++ F L+G RC
Sbjct: 16 CGIWQKAAMVALQGNKSWFGLAGGGATVRLRC 47
>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
Length = 80
Score = 25.8 bits (54), Expect = 9.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 148 CLCSSGCASCRYS 110
C C +GC C+YS
Sbjct: 14 CQCGNGCGGCKYS 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,613,250
Number of Sequences: 37544
Number of extensions: 185026
Number of successful extensions: 406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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