Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31030
         (351 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   1.9  
SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)                 28   2.4  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   2.4  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   3.2  
SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)                      27   3.2  
SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   26   9.9  
SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 40  CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 159
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
          Length = 1134

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 293  LIPNKTEKVRSWSMSRTGDV*HHLMAWGLPWQQQSTVTQC 174
            + P+ T +   W  +   D   +++ W   WQ +  VT+C
Sbjct: 961  MTPSYTAQSHPWMTTALQDDLDNVLDWSAAWQMEFNVTKC 1000


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 52  WHWGSVDSISGSRARFQLSGNSGRKHSR 135
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 52  WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR 156
           + W  VDSI+ S+A+F  S  +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


>SB_42271| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 591

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 347 FFFFFTSHRQIY*KFKC--ILIPNKTEKVRSW 258
           FFF+F   R+++   KC  + I N T+  RSW
Sbjct: 141 FFFYFKEARRVFENRKCSVVEIINFTDITRSW 172


>SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +1

Query: 85  SRARFQLSGNSGRKHSRCCTSILRKFSGR 171
           SRA   LS  +  K SR C  I R FSGR
Sbjct: 136 SRAASFLSARAIPKESRGCNCIERVFSGR 164


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 239 HPFSTCSRIGPFL 277
           HPF T S IGPFL
Sbjct: 431 HPFVTSSEIGPFL 443


>SB_19573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 43 CNIWHWGSVDSISGSRARF 99
          C + HWGSV + +  RAR+
Sbjct: 35 CQVPHWGSVRTFNVCRARY 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,732,843
Number of Sequences: 59808
Number of extensions: 207437
Number of successful extensions: 440
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)