Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31030
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.13 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   0.31 
U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin prot...    26   8.7  
AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 10   SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 114
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -3

Query: 208  YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 56
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


>U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical
           protein T07E3.2 protein.
          Length = 89

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 267 DLFCFIWN*NAFKFLINLSMRCKKKKKK 350
           DLF  I+N     F + L + CKKKK K
Sbjct: 4   DLFVIIFNFCIITFSVYLGIGCKKKKNK 31


>AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin protein
           2 protein.
          Length = 203

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 80  LMESTDPQCHILQHRRPRLPLMQLE 6
           L+E  DP C ++ +++P++    +E
Sbjct: 68  LIEKLDPSCRVVYNKKPKMAFPMME 92


>AF039038-6|AAK21431.2|  629|Caenorhabditis elegans Hypothetical
           protein K06A5.1 protein.
          Length = 629

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 79  SGSRARFQLSGNSG 120
           S SR RF+LSGNSG
Sbjct: 308 SRSRGRFELSGNSG 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,877,954
Number of Sequences: 27780
Number of extensions: 148747
Number of successful extensions: 255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)