Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31028
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)                  28   9.5  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           28   9.5  

>SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 220 NSSTDAASRAAAHLISQTQFNIDI*HQTT*HRAA-NEYKKQNRFNTSIKIRK 372
           + S+  A +AA H+  +T+    +      + AA N  +K+NR NT  K+RK
Sbjct: 278 SKSSSTAIKAAMHVHFRTKKREHVTKANDSYNAALNRQRKRNRLNTKTKLRK 329


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -3

Query: 748  LFI*KI*KKTRYINKKSLIDKEARYKKNRVILIKK--SNSLRL*SFRNC-DREVSKGARG 578
            LF+  + +  RYINK++      R K+   +L+    S SL+L   ++C DR V +    
Sbjct: 1106 LFLYVVTRTRRYINKRAPESNGCREKRQEKLLVANAHSKSLKLFEKQSCTDRNVKRLCPK 1165

Query: 577  RRC 569
            + C
Sbjct: 1166 KNC 1168


>SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)
          Length = 764

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +2

Query: 230 RMLRRVLPRTSYHKRSSI*IYNIRRLNIEPRTNTKNKIDSTHRLKSVSIKANVPIRSRES 409
           R +RR    + + +R ++   ++RR  ++PR   +  +DS H  +  S   +V  ++ +S
Sbjct: 196 RHVRRKTLDSRHVRRKTLDSRHVRRKTLDPRHVKRKTLDSRHVRRKPSDSRHVRRKTLDS 255

Query: 410 IHQXXXXXXXXHYMIKCENTL 472
            H         H  ++C NTL
Sbjct: 256 RHVRRNTLDSRH--VRC-NTL 273


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 571  CLEHRAAAAPCVMYLCININYNYNS--PVVFG 482
            C  +R+ AAPCV+ L I IN++  S   V FG
Sbjct: 1105 CRPNRSKAAPCVLELKIVINFSSGSYEVVTFG 1136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,768,746
Number of Sequences: 59808
Number of extensions: 301326
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)