Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31026
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22730.1 68417.m03279 leucine-rich repeat transmembrane prote...    29   1.7  
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr...    28   5.2  
At3g11410.1 68416.m01392 protein phosphatase 2C, putative / PP2C...    28   5.2  
At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C...    28   5.2  
At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C...    28   5.2  
At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C...    27   6.8  
At4g24290.2 68417.m03488 expressed protein                             27   6.8  
At4g24290.1 68417.m03487 expressed protein                             27   6.8  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    27   9.0  

>At4g22730.1 68417.m03279 leucine-rich repeat transmembrane protein
           kinase, putative leucine rich repeat receptor-like
           kinase, Oryza sativa, PATCHX:E267533
          Length = 688

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 301 SLTRLDTM-LRVNLFLRSPPPRAKLLNSLDRFK**SLNTGLCGEDPP 438
           ++ +LDT+ LR N      PP  K LN   +F+    NTGLCG D P
Sbjct: 210 NIPQLDTLDLRNNTLSGFVPPGLKKLNGSFQFE---NNTGLCGIDFP 253


>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain ;annotation temporarily based on
           supporting cDNA gi|17224394|gb|AF246291.1|AF246291
          Length = 637

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/36 (36%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = -3

Query: 519 ENTTIVKKNVQKNMAVSIKLITSNKRMWW-IFATQS 415
           +N T V +N++K++AVS++ I  +  ++W + A+QS
Sbjct: 5   QNRTTVPENLKKHLAVSVRNIQWSYGIFWSVSASQS 40


>At3g11410.1 68416.m01392 protein phosphatase 2C, putative / PP2C,
           putative identical to protein phosphatase 2C (PP2C)
           GB:P49598 [Arabidopsis thaliana]; contains Pfam profile
           PF00481: Protein phosphatase 2C; identical to cDNA
           protein phosphatase 2C GI:633027
          Length = 399

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 190 QFPTHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGG 77
           Q P  DAVGS  +V V +    +     D R VLCR G
Sbjct: 213 QSPQCDAVGSTAVVSVVTPEKIIVSNCGDSRAVLCRNG 250


>At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C,
           putative contains  PF00481: Protein phosphatase 2C
           domain; similar to protein phpsphatase 2C (PP2C)
           (GI:7768151) [Fagus sylvatica].
          Length = 362

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 190 QFPTHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGG 77
           Q P  D+VGS  +V V +    V     D R VLCR G
Sbjct: 182 QTPACDSVGSTAVVSVITPDKIVVANCGDSRAVLCRNG 219


>At1g07430.1 68414.m00793 protein phosphatase 2C, putative / PP2C,
           putative similar to GB:CAB90633 from [Fagus sylvatica]
          Length = 442

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 190 QFPTHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGG 77
           Q P  DAVGS  +V V +    +     D R VLCR G
Sbjct: 225 QTPDCDAVGSTAVVSVITPEKIIVANCGDSRAVLCRNG 262


>At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C,
           putative ABA induced protein phosphatase 2C, Fagus
           sylvatica, EMBL:FSY277743
          Length = 413

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 190 QFPTHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGG 77
           Q P  DAVGS  +V V +    +     D R VLCR G
Sbjct: 213 QRPDCDAVGSTAVVSVLTPEKIIVANCGDSRAVLCRNG 250


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 151 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 68
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g24290.1 68417.m03487 expressed protein
          Length = 350

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 151 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 68
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 328 RVNLFLRSPPPRAK-LLNSL 384
           RV L+L  PPPRA  LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,774,735
Number of Sequences: 28952
Number of extensions: 203431
Number of successful extensions: 596
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)