Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31025
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 77 2e-15
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.60
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 28 1.4
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 1.8
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 27 2.4
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 26 4.2
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 26 5.6
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 26 5.6
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 26 5.6
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 26 5.6
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2... 25 9.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 9.8
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 9.8
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 77.4 bits (182), Expect = 2e-15
Identities = 35/64 (54%), Positives = 43/64 (67%)
Frame = +1
Query: 43 HPVAVVYYRSGYEPAQYPTAREWDARLRVERSTAIKCPSIHYQLAGTKKVQQALAGPGVL 222
+ VAVVYYR GY YP+ WD RL +E + AIKCPSI LAG+KK+QQ LA L
Sbjct: 283 YEVAVVYYRVGYALDDYPSQEAWDMRLTIENTLAIKCPSISTHLAGSKKIQQVLAESNAL 342
Query: 223 EKFM 234
E+F+
Sbjct: 343 ERFL 346
Score = 66.9 bits (156), Expect = 2e-12
Identities = 36/90 (40%), Positives = 49/90 (54%)
Frame = +3
Query: 243 DEHLRVRDIFTGLYSLDFDESGERAVEMALADAERFVLKPQREGGGNNVYGSEVRDALTR 422
DE VR F +Y LD G+ +++A E FVLKPQREGGGNN YG ++ L++
Sbjct: 349 DELQAVRSTFADMYPLDDTPRGKEGIKLAFEKPEDFVLKPQREGGGNNTYGKDIPGLLSK 408
Query: 423 MRHSRERAAYILMERILPPLVSGYMIRPGR 512
M E +YILM I Y+++ R
Sbjct: 409 M-PQEEWDSYILMRYINAVPSQNYILKGER 437
Score = 39.9 bits (89), Expect = 3e-04
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 521 PPLVDLVSELGIFGVIIGT--KEKIYCNRQVGHMLRTKLADANEGGVAAG 664
P D+V E+GI G I+ +++ N Q G + RTK NEGGVA G
Sbjct: 438 PEKFDVVDEIGILGTIVWNIKTDEVVQNGQSGFICRTKPKKTNEGGVATG 487
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.60
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 260 DSEVLVPEPMNFSSTPGPARACWTFF 183
D+E++ P+ FS+TP R WT F
Sbjct: 3430 DTEIMKLVPVRFSNTPTTLRLMWTLF 3455
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 139 TAIKCPSIHYQLAGTKKVQQALAGPGVLEKFMGSGTSTSESGIYSRDCTRWTST 300
T + ++ +AG+ K + G F +GT++ + ++SRD T WT T
Sbjct: 55 TMVSPENVKTAIAGSAKDHETCRG------FKKTGTTSYKDFVFSRDYTNWTPT 102
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 395 FGSEGRVDSHATQPGAGRVHTDGEDIAAS 481
+GSE + S + QPG G V T + + AS
Sbjct: 248 YGSEKLISSGSQQPGHGMVQTTSDKVNAS 276
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 34 LDGHPVAVVYYRSGYEPAQYPTAREWDARLR-VERSTAIK 150
+ G P + + G EP QY AR+ D+ + V T IK
Sbjct: 93 ITGFPTLIWFPPDGSEPVQYSNARDVDSLTQFVSEKTGIK 132
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 4.2
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = +3
Query: 84 GTVSHRKGMGREITRRKIHGHKMSIDPLPTGGNEEGPTSPGRSRGAGEVHGLR------D 245
GT+ +G G+ + R G S +GG G T RS GAG G R D
Sbjct: 113 GTLLKVRGRGQNVQRGGRGGRYGS-----SGGRGAGDTVVSRSSGAGGARGRRFGWKDYD 167
Query: 246 EHLRVRD 266
+H R+R+
Sbjct: 168 KHQRLRN 174
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 351 VLKPQREGGGNNVYGSEVRDALT 419
+L PQ+EGGG V + A+T
Sbjct: 102 ILAPQKEGGGKPVTSGSLHKAIT 124
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 246 EHLRVRDIFTGLYSLDFDE 302
E L D+F G+Y +DFD+
Sbjct: 151 EQLLQHDVFLGVYGVDFDQ 169
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 443 GRVHTDGEDIAASGIRVHDKAGAPVPPPLVDLVSELGIFGV 565
G H+ E+ S +++H A P PP+V VS + + GV
Sbjct: 47 GPAHSVHENRIYS-LKIHCDANYPDAPPIVTFVSRINLPGV 86
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 360 PQREGGGNNVYGSEVRDALTRMRHSRERAA-YILMERILPPLVSGYMIRPGRL 515
P+R+ + V LT + +R+ Y++ P ++ M+RPGRL
Sbjct: 599 PRRDDSLSEASSRVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRL 651
>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 512 PVPPPLVDLVSELGIFGV 565
P+PP L DL SELG +G+
Sbjct: 222 PIPPTL-DLASELGKYGL 238
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 4 RELNDKKQLILDGHPVAVVYYRSGYEPAQYPTAREWDARLRVERST 141
RE Q I + PVA Y+ EP+ Y E + R E S+
Sbjct: 763 RESAHADQAIANTGPVAPPYFEHETEPSHYEEEEEEEPEERREESS 808
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 360 PQREGGGNNVYGSEVRDALTRMRHSRER-AAYILMERILPPLVSGYMIRPGRL 515
P+R V V LT+M + YI+ P ++ ++RPGRL
Sbjct: 713 PRRGQDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRL 765
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,373
Number of Sequences: 5004
Number of extensions: 67283
Number of successful extensions: 215
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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