Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31023
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    30   0.32 
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    29   0.56 
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    29   0.74 
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    28   1.3  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    26   5.2  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 311 HATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQGDSRKHLFEAYKEYGEILEPG 481
           H++  L+ + K H  + K+ +PS    K S  +    D    LF+ Y ++G +L  G
Sbjct: 258 HSSLDLRRFFKSHQKTDKEKKPSVSKSKSSANL---QDDHFGLFKKYGKFGRMLGSG 311


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = +3

Query: 3   YRHRLNIAELTKSEHDMYLMGITMASLANPAETSRHKVRRRLRACYV 143
           ++H   +++   SE  ++  GI +  +A+P     H++ + L +C++
Sbjct: 163 FQHEFTVSKYASSEESIWSAGIAIPEIAHPPSYD-HRLHQSLLSCFL 208


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 373 LNIFRRICMLLQIFLKEIRCMFVYV*SESVIGLLTNISMYLGA 245
           L IFR I ++LQIFL  I C+++    E   GL +   + LG+
Sbjct: 145 LGIFRFIMLILQIFLPGIVCIYLCEIIEKGHGLGSGPVLLLGS 187


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -1

Query: 495 PINLTPGSKISPYSL*ASNKCFRESPWIIMVLLPFLPSPEG*TSLGEFACCFKYSLRKFV 316
           PI+L P ++I PY   + +K F        +++  LP   G T +G  A C   +++K V
Sbjct: 315 PIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIV--LPCGAGKTLVGITAAC---TIKKSV 369

Query: 315 ACLYMSKVKVL 283
             L  S V V+
Sbjct: 370 IVLCTSSVSVM 380


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 293 TLDIYKHATNFLKEYLKQHANSPKDV 370
           TL I   A N LKE  +++A  PKDV
Sbjct: 183 TLSIEMAAKNALKEAKRENAKVPKDV 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,039
Number of Sequences: 5004
Number of extensions: 59862
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)