Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31023
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0164 + 5144935-5144942,5145893-5145932,5146245-5146491,514...    30   1.8  
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529...    29   3.1  
09_02_0150 - 5033342-5033806                                           28   5.4  
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083...    28   5.4  
04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394...    28   5.4  
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    28   7.1  

>09_02_0164 +
           5144935-5144942,5145893-5145932,5146245-5146491,
           5146512-5146873
          Length = 218

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/64 (18%), Positives = 32/64 (50%)
 Frame = +3

Query: 420 ETLESTCSRLIRSMEKS*NQVLN*WVIQPSSVYERPVSTC*IRHQKTRDTKGHDSVSKWQ 599
           ET ++     I   ++   + ++ W+     +YE  +    ++H++  D K  +++ K++
Sbjct: 15  ETAKTIAPSRIDRHQQPVKETMSVWMKAADDMYEEALEHMDMQHKRLEDAKRQEAILKYK 74

Query: 600 MHVL 611
            H+L
Sbjct: 75  YHIL 78


>04_04_0417 -
           25052305-25052398,25052583-25052672,25052740-25052905,
           25053547-25053647,25053735-25053775,25054170-25054181
          Length = 167

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 305 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 418
           Y+   N +  Y K+H+N P  + P    K+G   II Q
Sbjct: 98  YQRQVNLVAGYEKRHSNIPAHISPCFRVKEGDHVIIGQ 135


>09_02_0150 - 5033342-5033806
          Length = 154

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 605 MHLPLRNGIMSFGISCFLVANLTCGNWSFINARRL 501
           +H+ + NG+    + C  + ++ C     + ARRL
Sbjct: 55  LHIMIENGVRPNNVRCTTLISIRCNEGGMVEARRL 89


>07_03_1584 +
           27907345-27907357,27907693-27908039,27908202-27908319,
           27908653-27908705,27908808-27908978,27909447-27909643,
           27909729-27909807,27909954-27909992,27910202-27910321,
           27910417-27910518,27910654-27910737,27910832-27911074,
           27911156-27911281,27911365-27911439,27911534-27911605,
           27911807-27911926,27912075-27912172,27912643-27912802,
           27912867-27912980,27913029-27913121,27913122-27913319,
           27913404-27913497,27914032-27914192
          Length = 958

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = +2

Query: 314 ATNFLKEYLKQH------ANSPKDVQPSGEGKKGSKTIIIQGDS-RKHLFEAYKEYGEIL 472
           A NFL EY KQH       N+ K +    +        + + DS R+ LF+  +    I 
Sbjct: 600 AANFLNEYKKQHYEFKEDCNTEKKIIAKLKNSSEKSLWLEKEDSIRRGLFDLLQNIVLIR 659

Query: 473 EPGVKLMGYSTFERL*KTSFHMLNSPPKN 559
           +P      Y  F +   +SF+ L+   KN
Sbjct: 660 DPEDSTKFYPRFNQEDTSSFNDLDEHSKN 688


>04_03_1041 -
           21938347-21938529,21938618-21938773,21939291-21939408,
           21939536-21940203,21941773-21941802
          Length = 384

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
 Frame = +3

Query: 45  HDMYLMGITMASLANPAETSRHKVRRRLRACYVYQGRKVC--LEAF------LYLENVTH 200
           +D YL+ +          T  H     L  C++     VC  LE        LYL+ +TH
Sbjct: 161 YDSYLLEMHKLGSNYGCLTKLHLTNVSLHECFMEHITTVCTLLEVLELNRCSLYLQEITH 220

Query: 201 YQLKRIRQHVMTHGVAPRYMEMLVRSPITLSL 296
            +LK    +++ HG  P  M  LVR+ I  S+
Sbjct: 221 PKLK----NLVLHG--PAVMPSLVRASIRFSV 246


>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 305 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 418
           Y H     + Y K+H+N P  + P    K+G   II Q
Sbjct: 82  YLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQ 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,478,874
Number of Sequences: 37544
Number of extensions: 357400
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)