Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31023
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical pr...    31   0.52 
AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical ...    29   2.8  
U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical
           protein F54F2.7 protein.
          Length = 157

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 22/76 (28%), Positives = 38/76 (50%)
 Frame = +2

Query: 341 KQHANSPKDVQPSGEGKKGSKTIIIQGDSRKHLFEAYKEYGEILEPGVKLMGYSTFERL* 520
           K+H       Q SG+GKKG+  +I+Q DS+   F+       ++  GV+       +RL 
Sbjct: 56  KKHGADRSTNQVSGKGKKGA--LILQPDSKLCTFKCKDGSEHVVRAGVRGTLVEMNDRL- 112

Query: 521 KTSFHMLNSPPKNKRY 568
           KT+   + + P N+ +
Sbjct: 113 KTTPDFIRTAPDNQGF 128


>AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical
           protein T07D3.4 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 212 TYPATCDDPWCCT*VHGNVGKKPYNTFTLDIYKHATNFLKEYLKQHAN---SPKDVQPSG 382
           TYP    DPWC   +HG++     N     + ++  ++ K++L        S K+VQ +G
Sbjct: 317 TYPIY--DPWCAADLHGHIFWVSCNPLEKILAEYGEDWKKDHLSSEYRWNYSQKNVQTNG 374

Query: 383 E 385
           +
Sbjct: 375 K 375


>U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical
           protein C28F5.4 protein.
          Length = 856

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 422 DSRKHLFEAYKEYGEILEPGVKLMGYSTFERL*KTSFHMLNSPPKNK 562
           D  KH  E      E L P ++      FE   KTS H  N P KN+
Sbjct: 389 DDVKHTMEKASILAECLHPKIR----KNFETALKTSHHAFNLPEKNE 431


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 627 VFVFIIRHAFATSKRNHVLWYLLFFGGEFNMWK 529
           + VF++     + ++N + WYL +FG E +  K
Sbjct: 815 IVVFVVYGRTPSGRQNFINWYLYYFGKEADFQK 847


>AF003146-4|AAB54200.2|  650|Caenorhabditis elegans Hypothetical
           protein F56F4.3 protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 280 GLLTNISMYLGATPWVITCCRI 215
           G+ T ++  LG  PW+I C RI
Sbjct: 121 GMFTRMAPMLGGIPWLILCLRI 142


>Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical
           protein ZC302.1 protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 33  TKSEHDMYLMGITMASLANPAETSRHKVRRRLRACYVYQGRKVCLE 170
           T+ + DM L+G  +    NP+   +H+V + LR  Y   G  + LE
Sbjct: 101 TEQKVDMILLGGDLFHENNPSREVQHRVTQLLRQ-YCLNGNPIALE 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,385,339
Number of Sequences: 27780
Number of extensions: 333228
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)