Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31023
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein / b...    29   3.4  
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)            28   4.5  
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote...    28   4.5  
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...    28   5.9  
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)            28   5.9  
At1g54770.1 68414.m06245 expressed protein                             27   7.8  

>At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein /
           beta-glucosidase, putative (BG1) contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to GI:6651430
           from [Arabidopsis thaliana]
          Length = 528

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 266 VGKKPYNTFTLDIYKHATNFLKEYLKQHANSPK 364
           +G KP+N   LD+Y     +L +Y+K +   P+
Sbjct: 386 IGSKPFNG-KLDVYSKGLRYLLKYIKDNYGDPE 417


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 305 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 418
           Y H     + Y K+H+N P  V P    K+G   II Q
Sbjct: 91  YLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQ 128


>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 980

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -3

Query: 235 VITCCRIRFN**CVTFSRYKNASKQTFLP*YT*QALNL--LLTLCREVSAGFAKLAIVMP 62
           + TC +  FN   +      +  +  +   Y+ + L+L  L+ +C +V+ G A L    P
Sbjct: 722 ITTCSKPGFNALVLPLMPNGSLERHLYPGEYSSKNLDLIQLVNICSDVAEGIAYLHHYSP 781

Query: 61  IKYMSCSLFVSSAML 17
           +K + C L  S+ +L
Sbjct: 782 VKVVHCDLKPSNILL 796


>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 305 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 418
           Y H     + Y K+H+N P  V P    K+G +  I Q
Sbjct: 91  YLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQ 128


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 305 YKHATNFLKEYLKQHANSPKDVQPSGEGKKGSKTIIIQ 418
           Y H     + Y K+H+N P  V P    K+G   II Q
Sbjct: 91  YLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQ 128


>At1g54770.1 68414.m06245 expressed protein
          Length = 189

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 425 SRKHLFEAYKEYGEILEPGVKLMGYSTFERL*KTSFHMLNSPPKNKRYQR 574
           SR  L E Y + G ++EP  +  G  T +    T    L S PK   Y++
Sbjct: 107 SRSKLAEKYFQIGTVIEPAEEFYGRLTKKNRKATLADELVSDPKTALYRK 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,409,121
Number of Sequences: 28952
Number of extensions: 303066
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)