Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31021
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   2.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   6.4  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.4  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   8.5  

>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = -1

Query: 391 HLTTSLANK*LVNLWILECSPAVALILRNEKLLRLSAIFAILQERH*SLKFGKNMITKHL 212
           +LT+ L +  ++   +LE SPA   I RNE L +LS  F I +      KF K      +
Sbjct: 375 YLTSCLPSIKVILARVLESSPAFGFIERNE-LEQLSYHFRICE------KFFKESSENKM 427

Query: 211 LQIFEWVN 188
           L +FE  N
Sbjct: 428 LNLFEDYN 435


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 632 SSTYLSNKKKRSALKIQQNQSILS*LFSTFCDV 730
           +S Y SN  +RSA  I  + S L    ST+ DV
Sbjct: 304 ASRYFSNSTERSAQNISSSISSLKLTMSTYQDV 336


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 519 SNRKRYCFTAEIGGAVVPTRY 457
           SN KR+CF+  +G    P R+
Sbjct: 243 SNLKRFCFSESLGHIFAPLRF 263


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 640 GGRAHSPPGVTWLLEPNV 587
           GG  H P  V WLL P++
Sbjct: 235 GGPLHDPNTVMWLLRPDI 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,056
Number of Sequences: 5004
Number of extensions: 62029
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)