Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31019X
         (292 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase, put...    28   0.94 
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    27   2.9  
At5g49670.1 68418.m06150 hypothetical protein                          26   3.8  
At3g14540.1 68416.m01842 terpene synthase/cyclase family protein...    26   5.0  
At1g22100.1 68414.m02763 hypothetical protein                          25   6.6  
At5g07190.1 68418.m00819 embryo-specific protein 3, putative sim...    25   8.8  
At4g28880.1 68417.m04127 casein kinase, putative similar to simi...    25   8.8  
At4g23230.1 68417.m03350 protein kinase family protein contains ...    25   8.8  
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    25   8.8  

>At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase,
           putative similar to glycerol-3-phosphate dehydrogenase
           GB:BAA08926 from Mus musculus [SP|Q64521], Homo sapiens
           [GI:1020315], Rattus norvegicus [SP|P35571]; contains
           Pfam profile PF01266 FAD dependent oxidoreductase
          Length = 629

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 59  ESQLKGLAKYFNSQTNRGRLNTARA-TYAVMGAVIL 163
           +  L+G   Y++ Q N  RLN   A T A+ GA +L
Sbjct: 217 DKNLRGTVVYYDGQMNDSRLNVGLACTAALAGAAVL 252


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 229 YRNMLINFACNSFLGFRFQCEVK 161
           YRNM  +    +F GFR++C  K
Sbjct: 422 YRNMHCSTCSRAFTGFRYKCSEK 444


>At5g49670.1 68418.m06150 hypothetical protein 
          Length = 1184

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 147 ITAYVALAVFNLPLFV*LLKYFAKPLSW 64
           + A++ + +F + LFV LL  F K L W
Sbjct: 1   MAAFLVMFIFTIALFVALLWVFFKSLPW 28


>At3g14540.1 68416.m01842 terpene synthase/cyclase family protein
           similar to terpene synthase GB:CAA72074 from
           [Arabidopsis thaliana]
          Length = 602

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 44  DSSVDESQLKGLAKYFNSQTNRGRLNTARATYAVMGA 154
           D SV ES L GL  YF  Q + GR+  A+    ++ A
Sbjct: 317 DRSV-ESHLGGLGPYFEPQYSLGRIIVAKTIMIIVVA 352


>At1g22100.1 68414.m02763 hypothetical protein
          Length = 457

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 142 SNGSSHPLLHTET*IQEMNYKQNLL 216
           S  SSH  LH ET  QE  YK + +
Sbjct: 395 SKSSSHSNLHLETTKQEFEYKVHFI 419


>At5g07190.1 68418.m00819 embryo-specific protein 3, putative
           similar to embryo-specific protein 3 GI:3335171 from
           [Arabidopsis thaliana]
          Length = 213

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 291 FFIFIFCSHDFNLSYIT*QSLT 226
           FF FIF +H F+LS I  Q  T
Sbjct: 12  FFAFIFVTHAFDLSIIQMQQGT 33


>At4g28880.1 68417.m04127 casein kinase, putative similar to similar
           to casein kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158; contains protein kinase domain,
           Pfam:PF00069
          Length = 415

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 56  DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 169
           +   L G A+Y +  T+ G   + R     +G V+LYF
Sbjct: 169 ENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYF 206


>At4g23230.1 68417.m03350 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 507

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 29  IRMAGDSSVDESQLKGLAKYFNSQTNRGRLNTA 127
           IRM G+ S+D++Q+     + +S  N+  +  A
Sbjct: 20  IRMNGNISIDQNQMNRFKDFVSSTMNQAAVKAA 52


>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 5   CSNYIIFQIRMAGDSSVDESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 169
           CS+Y++  I   G    D  +L+G+ +  +   N G          +   VILYF
Sbjct: 286 CSDYVVHSICALGKDVWDGKELEGIPEIIDITENDGPFE------VISEGVILYF 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,251,874
Number of Sequences: 28952
Number of extensions: 79264
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)