Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31017
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.35 
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    24   1.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +1

Query: 103  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAISSTWSPAPW 282
            N+I  + W +  D  G     AYHGD  +  E I    ++A   +Y+            W
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA---EYI--KTKGFGGAVAW 965

Query: 283  TLSARDLSDR 312
            T+   D S+R
Sbjct: 966  TIDLDDFSNR 975



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 648  QTKPTASTTRLYTTSASAL 704
            QTK T STT   TT+ S L
Sbjct: 1184 QTKTTTSTTTRPTTTVSQL 1202


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 208 VYYNEASGGKYVPRAISSTWSPAPWTLSARDLSDRSSVRTTSFSDSPAPATTG 366
           +Y N  S    V   +S   S +  TLS         +++TS  D  APATTG
Sbjct: 218 LYGNSMSVDSSVQSWLSGGASASKVTLSVPFYGHSWYLQSTSNHDVGAPATTG 270


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 324 PDGRSVRKVPSGQSPWCRAPSRR 256
           P G +   +PS   PW R+   R
Sbjct: 220 PPGNTAAALPSPLYPWMRSQFER 242


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 324 PDGRSVRKVPSGQSPWCRAPSRR 256
           P G +   +PS   PW R+   R
Sbjct: 222 PPGNTAAALPSPLYPWMRSQFER 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,588
Number of Sequences: 336
Number of extensions: 3711
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)