Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31016
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)                   29   4.1  
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   7.2  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          28   9.5  

>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
          Length = 1054

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +1

Query: 562 EEPVYGL-MFQEV--KYLLAPLWED--RTAQESPCMWLVLFTKVPRSLVNSFLLMAALTF 726
           E P YG  +F+ +   Y L+ L     R  + S C+     T  P  +V + ++   L+ 
Sbjct: 449 EVPTYGAKIFKRIYQTYQLSQLISKPTRITKSSKCLLDHYVTNSPEKIVKTSVIQLGLSD 508

Query: 727 HGVVLNMESLN 759
           HG++L +  +N
Sbjct: 509 HGMILGIRKIN 519


>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1079

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 501 CSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPGYEW 379
           C C R +   FD  GAC T  C +  + + E F + PGY W
Sbjct: 346 CFC-RKNHHRFDRFGACFT--CPNGMICSNETFTLAPGYYW 383


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 274 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 426
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 266 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 394
           P  ++ K P  L +G I+  GF+G ++AL      ++LF    G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,519,016
Number of Sequences: 59808
Number of extensions: 577738
Number of successful extensions: 1644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)