Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31016
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical... 30 2.1
AF000299-3|AAW88403.1| 342|Caenorhabditis elegans Serpentine re... 29 3.6
AF000299-2|AAC47981.2| 324|Caenorhabditis elegans Serpentine re... 29 3.6
Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical pr... 25 5.7
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 28 6.3
AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical... 28 6.3
U58753-5|AAC24434.2| 348|Caenorhabditis elegans Hypothetical pr... 28 8.4
>AL132948-30|CAB61063.1| 365|Caenorhabditis elegans Hypothetical
protein Y39B6A.39 protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Frame = +2
Query: 116 SSGSVQFKVRAANDAHIALTTGP---QESDPMYEVMIGGWGNAKSVIRKIEPSPIRLKL- 283
++G ++K R+ D LT P +E DP + W A++ + P P+R+
Sbjct: 70 ATGRTEYKTRSRFDLMDRLTKRPPRSEEMDPEAQKWCDVWPAARTFASSVVPLPVRMGTR 129
Query: 284 ----KAPEFLTEGNIVVFGFVGIAALSP 355
K F EGN+ + L+P
Sbjct: 130 PNVEKRAPFKKEGNLELVKIPNFLHLTP 157
>AF000299-3|AAW88403.1| 342|Caenorhabditis elegans Serpentine
receptor, class z protein24, isoform a protein.
Length = 342
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 661 VLFTKVPRSLVNSFLLMAALTFHGVVL 741
++FT + S+VNS+L+ + LT G++L
Sbjct: 94 IIFTVISTSVVNSWLIFSILTITGLIL 120
>AF000299-2|AAC47981.2| 324|Caenorhabditis elegans Serpentine
receptor, class z protein24, isoform b protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 661 VLFTKVPRSLVNSFLLMAALTFHGVVL 741
++FT + S+VNS+L+ + LT G++L
Sbjct: 94 IIFTVISTSVVNSWLIFSILTITGLIL 120
>Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical
protein F36D3.9 protein.
Length = 344
Score = 25.0 bits (52), Expect(2) = 5.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 602 TSWRRCGKTGLLRRAPVCGSC 664
T W +C L+R CGSC
Sbjct: 109 TRWPQCKSMKLIREQSNCGSC 129
Score = 21.8 bits (44), Expect(2) = 5.7
Identities = 8/26 (30%), Positives = 11/26 (42%)
Frame = +2
Query: 653 CGSCCSRRCHDPW*TRSFSWLRLRSM 730
CG C C + R+F W R +
Sbjct: 163 CGMSCGEGCDGGFPYRAFQWWARRGV 188
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 433 CTGWGATGSWKIEVPPTAPVAAALYEHPLATLEATEETHPLRLEEPVYGLMFQEVKYLL- 609
C G + + T + + + + T E+ +E+HP L PV+ ++ + L
Sbjct: 1433 CKASNPAGKAEANLQVTVIASPDIKDPDVVTQESIKESHPFSLYCPVFSNPLPQISWYLN 1492
Query: 610 -APLWEDRTA 636
PL +D+T+
Sbjct: 1493 DKPLIDDKTS 1502
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 433 CTGWGATGSWKIEVPPTAPVAAALYEHPLATLEATEETHPLRLEEPVYGLMFQEVKYLL- 609
C G + + T + + + + T E+ +E+HP L PV+ ++ + L
Sbjct: 1433 CKASNPAGKAEANLQVTVIASPDIKDPDVVTQESIKESHPFSLYCPVFSNPLPQISWYLN 1492
Query: 610 -APLWEDRTA 636
PL +D+T+
Sbjct: 1493 DKPLIDDKTS 1502
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 433 CTGWGATGSWKIEVPPTAPVAAALYEHPLATLEATEETHPLRLEEPVYGLMFQEVKYLL- 609
C G + + T + + + + T E+ +E+HP L PV+ ++ + L
Sbjct: 1433 CKASNPAGKAEANLQVTVIASPDIKDPDVVTQESIKESHPFSLYCPVFSNPLPQISWYLN 1492
Query: 610 -APLWEDRTA 636
PL +D+T+
Sbjct: 1493 DKPLIDDKTS 1502
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 433 CTGWGATGSWKIEVPPTAPVAAALYEHPLATLEATEETHPLRLEEPVYGLMFQEVKYLL- 609
C G + + T + + + + T E+ +E+HP L PV+ ++ + L
Sbjct: 1433 CKASNPAGKAEANLQVTVIASPDIKDPDVVTQESIKESHPFSLYCPVFSNPLPQISWYLN 1492
Query: 610 -APLWEDRTA 636
PL +D+T+
Sbjct: 1493 DKPLIDDKTS 1502
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 433 CTGWGATGSWKIEVPPTAPVAAALYEHPLATLEATEETHPLRLEEPVYGLMFQEVKYLL- 609
C G + + T + + + + T E+ +E+HP L PV+ ++ + L
Sbjct: 1433 CKASNPAGKAEANLQVTVIASPDIKDPDVVTQESIKESHPFSLYCPVFSNPLPQISWYLN 1492
Query: 610 -APLWEDRTA 636
PL +D+T+
Sbjct: 1493 DKPLIDDKTS 1502
>AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical
protein F32D1.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 413 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 306
G GSGS D +G + P+R + +P + PR P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194
>U58753-5|AAC24434.2| 348|Caenorhabditis elegans Hypothetical
protein W03B1.6 protein.
Length = 348
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 117 ETGKNWY*RLSSVATSMTLAMIVV 46
ET + WY +LSS +T+M +A++ V
Sbjct: 15 ETFEKWYLKLSSTSTAMLIAILFV 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,717,003
Number of Sequences: 27780
Number of extensions: 419393
Number of successful extensions: 1296
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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