Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31016
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family...    29   4.5  
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    29   4.5  
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    28   5.9  
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    28   5.9  
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ...    28   7.8  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    28   7.8  

>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 300

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 413 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 288
           G G  S++D+N    P  P +  P   +TQ+  Y P +  PG
Sbjct: 16  GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 708 EKERVYQGS--WHLREQHEPHTGALLSSPVFPQRRQEVLDLLKHQPIYRLLQTEGVRFLR 535
           E++R   G   + L EQ EP + A ++  +    + EVL LL+     +   TE +  LR
Sbjct: 587 EQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLR 646

Query: 534 SLQGSQ 517
           S+   Q
Sbjct: 647 SVAQQQ 652


>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +1

Query: 310 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 444
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +1

Query: 310 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 444
           E++ +W+    G+IS G+     PF      W DP+P   V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147


>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 561

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 693 YQGSWHLREQHEPHTGALLSSPVFPQRRQEVLDLLK 586
           YQ +WHL E H  ++   +S     ++R  V+++LK
Sbjct: 473 YQYAWHLPEDHRKYS-VYISEQDVKEKRVNVVEILK 507


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 359 PAEIMPLSQRTQKPRYSPPLRIP 291
           P E+ P  ++   P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,401
Number of Sequences: 28952
Number of extensions: 406711
Number of successful extensions: 1323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)