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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31015
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    38   0.001
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    31   0.16 
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    30   0.37 
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    29   0.64 
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    27   2.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.6  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   2.6  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   4.5  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   6.0  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    25   7.9  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/71 (29%), Positives = 41/71 (57%)
 Frame = +1

Query: 274 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 453
           +A+V Q+ S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+
Sbjct: 90  KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149

Query: 454 LVTERITLADV 486
           LV  R+TLAD+
Sbjct: 150 LVGSRLTLADI 160



 Score = 31.9 bits (69), Expect = 0.091
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 128 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 244
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = +2

Query: 8   MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 187
           M  G LY++  N R    L  A+     V +   +       S D   KFP  K+P F  
Sbjct: 1   MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57

Query: 188 ADGKVLLTESNAIAYY 235
           ADG   L+E  AI  Y
Sbjct: 58  ADG-FELSEVIAIVKY 72



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/73 (23%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
 Frame = +1

Query: 274 QARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 447
           +A + +W  + + +++ P +   WV  + G + + ++  + + +  + +LK+ +  +  R
Sbjct: 93  EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152

Query: 448 TFLVTERITLADV 486
           T+LV +R TLAD+
Sbjct: 153 TYLVGDRFTLADL 165


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +2

Query: 401 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLSSVHCCCFPARARP--ERPFVADKRSAL 568
           TY PP  Y  D+FS APS+   +     S+S       PA        PFV    S L
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMSPTPEVVSPAATNSAISSPFVRKSSSDL 314


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +2

Query: 173 PAFESADGKVLLTESNAIAYYVANESLPEEIWLPKPVSGSGHHGLTANYCLLPALGSSLT 352
           P F+  D  V   E + +       + P++++  KPV  +    L  +    P L +++ 
Sbjct: 647 PLFKGHDDAVRALEESELITITTVNARPDKVYAGKPVYVTAFRQLVND----PVLSANMQ 702

Query: 353 LVSCNSTNRMLN 388
           LV CN+   M N
Sbjct: 703 LVRCNALIGMAN 714


>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 233 YVANESLP-EEIWLPKPVSGSGHH 301
           YV N+  P  +IWL  PVSG  H+
Sbjct: 93  YVINKQPPAHQIWLSSPVSGPKHY 116


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 35  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 214
           P  F++ KA +  QY+          +FG  +K ++F K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 215 SN 220
           SN
Sbjct: 612 SN 613


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 263 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 358
           +W+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 204 STFPSALSNAGTFPAGNFFKKSSDL 130
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 293 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 400
           GH  L  + C  P++GSS  L+  +C   N R+  V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +2

Query: 209 TESNAIAYYVANESLPEEIWLP-KPVSGSGHHGLTANYCLLPALGSSLTLVSCNSTNRML 385
           +ES  I YY  N     E+WLP +  S   +   T    L+    ++L +  C+     +
Sbjct: 722 SESRIIVYYSNNTLYLSELWLPQRTFSSKLNLAATPKRLLVDKYTNTLIIGCCHVLVNEI 781

Query: 386 NVQSLTYW 409
               L ++
Sbjct: 782 TTSGLAFY 789


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 248 FHWQRSKRWHCFQLGAPFHRHFRMQAL 168
           FH   ++ +HC+++G P ++++  +AL
Sbjct: 363 FHHDYTE-YHCYRIGKPLYQNYEEEAL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,741
Number of Sequences: 5004
Number of extensions: 65374
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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