BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV31015 (698 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 38 0.001 SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 31 0.16 SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 30 0.37 SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 29 0.64 SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 27 2.0 SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.6 SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 2.6 SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.5 SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 6.0 SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0 SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 25 7.9 >SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 409 Score = 38.3 bits (85), Expect = 0.001 Identities = 21/71 (29%), Positives = 41/71 (57%) Frame = +1 Query: 274 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 453 +A+V Q+ S+++SEL A + P + +++Q + A++ + D L ++T+ Sbjct: 90 KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149 Query: 454 LVTERITLADV 486 LV R+TLAD+ Sbjct: 150 LVGSRLTLADI 160 Score = 31.9 bits (69), Expect = 0.091 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = +2 Query: 128 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 244 N D KFP K+P F DG L+E+ AIA+Y+A+ Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75 >SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 220 Score = 31.1 bits (67), Expect = 0.16 Identities = 25/76 (32%), Positives = 32/76 (42%) Frame = +2 Query: 8 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 187 M G LY++ N R L A+ V + + S D KFP K+P F Sbjct: 1 MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57 Query: 188 ADGKVLLTESNAIAYY 235 ADG L+E AI Y Sbjct: 58 ADG-FELSEVIAIVKY 72 Score = 30.7 bits (66), Expect = 0.21 Identities = 17/73 (23%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Frame = +1 Query: 274 QARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 447 +A + +W + + +++ P + WV + G + + ++ + + + + +LK+ + + R Sbjct: 93 EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152 Query: 448 TFLVTERITLADV 486 T+LV +R TLAD+ Sbjct: 153 TYLVGDRFTLADL 165 >SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 442 Score = 29.9 bits (64), Expect = 0.37 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Frame = +2 Query: 401 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLSSVHCCCFPARARP--ERPFVADKRSAL 568 TY PP Y D+FS APS+ + S+S PA PFV S L Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMSPTPEVVSPAATNSAISSPFVRKSSSDL 314 >SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 773 Score = 29.1 bits (62), Expect = 0.64 Identities = 18/72 (25%), Positives = 32/72 (44%) Frame = +2 Query: 173 PAFESADGKVLLTESNAIAYYVANESLPEEIWLPKPVSGSGHHGLTANYCLLPALGSSLT 352 P F+ D V E + + + P++++ KPV + L + P L +++ Sbjct: 647 PLFKGHDDAVRALEESELITITTVNARPDKVYAGKPVYVTAFRQLVND----PVLSANMQ 702 Query: 353 LVSCNSTNRMLN 388 LV CN+ M N Sbjct: 703 LVRCNALIGMAN 714 >SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 158 Score = 27.5 bits (58), Expect = 2.0 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Frame = +2 Query: 233 YVANESLP-EEIWLPKPVSGSGHH 301 YV N+ P +IWL PVSG H+ Sbjct: 93 YVINKQPPAHQIWLSSPVSGPKHY 116 >SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Schizosaccharomyces pombe|chr 1|||Manual Length = 738 Score = 27.1 bits (57), Expect = 2.6 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = +2 Query: 35 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 214 P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+ Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611 Query: 215 SN 220 SN Sbjct: 612 SN 613 >SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 267 Score = 27.1 bits (57), Expect = 2.6 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Frame = +2 Query: 263 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 358 +W+P PV SG T C+ LP G +T V Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55 >SPBC28F2.09 |||transcription factor TFIIA complex large subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 369 Score = 26.2 bits (55), Expect = 4.5 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 204 STFPSALSNAGTFPAGNFFKKSSDL 130 +TFP A + GTFP G F S L Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76 >SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 339 Score = 25.8 bits (54), Expect = 6.0 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +2 Query: 293 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 400 GH L + C P++GSS L+ +C N R+ V++L Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251 >SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1073 Score = 25.8 bits (54), Expect = 6.0 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Frame = +2 Query: 209 TESNAIAYYVANESLPEEIWLP-KPVSGSGHHGLTANYCLLPALGSSLTLVSCNSTNRML 385 +ES I YY N E+WLP + S + T L+ ++L + C+ + Sbjct: 722 SESRIIVYYSNNTLYLSELWLPQRTFSSKLNLAATPKRLLVDKYTNTLIIGCCHVLVNEI 781 Query: 386 NVQSLTYW 409 L ++ Sbjct: 782 TTSGLAFY 789 >SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 25.4 bits (53), Expect = 7.9 Identities = 8/27 (29%), Positives = 19/27 (70%) Frame = -1 Query: 248 FHWQRSKRWHCFQLGAPFHRHFRMQAL 168 FH ++ +HC+++G P ++++ +AL Sbjct: 363 FHHDYTE-YHCYRIGKPLYQNYEEEAL 388 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,025,741 Number of Sequences: 5004 Number of extensions: 65374 Number of successful extensions: 209 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 209 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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