Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31015
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 38 0.001
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 31 0.16
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 30 0.37
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 29 0.64
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 27 2.0
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.6
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 2.6
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.5
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 6.0
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 25 7.9
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +1
Query: 274 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 453
+A+V Q+ S+++SEL A + P + +++Q + A++ + D L ++T+
Sbjct: 90 KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149
Query: 454 LVTERITLADV 486
LV R+TLAD+
Sbjct: 150 LVGSRLTLADI 160
Score = 31.9 bits (69), Expect = 0.091
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 128 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 244
N D KFP K+P F DG L+E+ AIA+Y+A+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 31.1 bits (67), Expect = 0.16
Identities = 25/76 (32%), Positives = 32/76 (42%)
Frame = +2
Query: 8 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 187
M G LY++ N R L A+ V + + S D KFP K+P F
Sbjct: 1 MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57
Query: 188 ADGKVLLTESNAIAYY 235
ADG L+E AI Y
Sbjct: 58 ADG-FELSEVIAIVKY 72
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/73 (23%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 274 QARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 447
+A + +W + + +++ P + WV + G + + ++ + + + + +LK+ + + R
Sbjct: 93 EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152
Query: 448 TFLVTERITLADV 486
T+LV +R TLAD+
Sbjct: 153 TYLVGDRFTLADL 165
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +2
Query: 401 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLSSVHCCCFPARARP--ERPFVADKRSAL 568
TY PP Y D+FS APS+ + S+S PA PFV S L
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMSPTPEVVSPAATNSAISSPFVRKSSSDL 314
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +2
Query: 173 PAFESADGKVLLTESNAIAYYVANESLPEEIWLPKPVSGSGHHGLTANYCLLPALGSSLT 352
P F+ D V E + + + P++++ KPV + L + P L +++
Sbjct: 647 PLFKGHDDAVRALEESELITITTVNARPDKVYAGKPVYVTAFRQLVND----PVLSANMQ 702
Query: 353 LVSCNSTNRMLN 388
LV CN+ M N
Sbjct: 703 LVRCNALIGMAN 714
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 233 YVANESLP-EEIWLPKPVSGSGHH 301
YV N+ P +IWL PVSG H+
Sbjct: 93 YVINKQPPAHQIWLSSPVSGPKHY 116
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 35 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 214
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 215 SN 220
SN
Sbjct: 612 SN 613
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 263 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 358
+W+P PV SG T C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 204 STFPSALSNAGTFPAGNFFKKSSDL 130
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 293 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 400
GH L + C P++GSS L+ +C N R+ V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 209 TESNAIAYYVANESLPEEIWLP-KPVSGSGHHGLTANYCLLPALGSSLTLVSCNSTNRML 385
+ES I YY N E+WLP + S + T L+ ++L + C+ +
Sbjct: 722 SESRIIVYYSNNTLYLSELWLPQRTFSSKLNLAATPKRLLVDKYTNTLIIGCCHVLVNEI 781
Query: 386 NVQSLTYW 409
L ++
Sbjct: 782 TTSGLAFY 789
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = -1
Query: 248 FHWQRSKRWHCFQLGAPFHRHFRMQAL 168
FH ++ +HC+++G P ++++ +AL
Sbjct: 363 FHHDYTE-YHCYRIGKPLYQNYEEEAL 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,741
Number of Sequences: 5004
Number of extensions: 65374
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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