Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31015
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 87   2e-17
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   1.2  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  30   1.6  
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     29   2.7  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 29   2.7  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   4.8  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   6.3  
SB_26202| Best HMM Match : Pkinase (HMM E-Value=0.0017)                28   6.3  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   8.4  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 42/77 (54%), Positives = 52/77 (67%)
 Frame = +2

Query: 8   MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 187
           MAAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 1   MAAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFET 59

Query: 188 ADGKVLLTESNAIAYYV 238
                       +  YV
Sbjct: 60  KTANACTRAMPLLTTYV 76



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 31/67 (46%), Positives = 49/67 (73%)
 Frame = +1

Query: 292 WASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERI 471
           + +++D ELLPA+  WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+
Sbjct: 75  YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERV 134

Query: 472 TLADVIV 492
           TLAD+ V
Sbjct: 135 TLADIAV 141


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 41  NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 220
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 221 AIAYYVANESL 253
            I   + N+SL
Sbjct: 165 IIVNDIENDSL 175


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 247 KSPGGDLATQARVWQWASWSDSELLPASCA 336
           KSP  DL T A+V+ WA W   ++   SCA
Sbjct: 75  KSP--DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 247 KSPGGDLATQARVWQWASWSDSELLPASCA 336
           KSP  DL T A+V+ WA W   ++   SCA
Sbjct: 75  KSP--DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 340 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 483
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 585 GRRSGTNAERLSATNGRSGLARAGKQQQC-TEDNDIGKCDSLGNKEGACE 439
           G+      +    T G+ G  R  K   C +E+++ G+CDS  ++EG C+
Sbjct: 260 GKDGSPGLKGTRGTRGKRG-ERGRKGDMCDSEESEEGECDSEESEEGECD 308


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 256 GGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAK--SDLLAALKVLD 429
           G DL  + +V QW   +  +   A  A      G      ++VE AK  +D+   L  ++
Sbjct: 78  GSDLFQRGQVDQWLDITTCDFEAAVAAVAIAKEG------RDVEGAKIVADINKFLGFVE 131

Query: 430 GHLLTRTFLVTERITLADVIV 492
            HL  R FLV + +T+AD  V
Sbjct: 132 KHLAGRKFLVGDSVTIADFSV 152


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +2

Query: 101  APNFVFGET---NKSEDFLKKFPAGKVPAFE---SADGKVL-LTESNAIAYYVANESLPE 259
            +PN +F      + +E +L  F +G   + E   SA+G++  L     +A  ++++   E
Sbjct: 1798 SPNKMFNTAAPQSSNEVWLTSFCSGHSLSVELAASAEGQLNGLVSQAGVASLLSSQGFRE 1857

Query: 260  EIWLPKPVSGSGHHGL 307
             +W P+PVSG     L
Sbjct: 1858 GLWKPEPVSGEAFSSL 1873


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 170 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 51
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +3

Query: 435 SSHTHLPC--YRENHTCRCHCLQYTAAAFQH 521
           S +T  PC  Y+   TC C C+ YT     H
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYTPFPCPH 903


>SB_26202| Best HMM Match : Pkinase (HMM E-Value=0.0017)
          Length = 401

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 471 HTCRCHCLQYTAAAFQHVLD 530
           HTC C C Q T A  Q+V D
Sbjct: 270 HTCMCKCCQTTPAGRQYVSD 289


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 358 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 492
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,854,627
Number of Sequences: 59808
Number of extensions: 541779
Number of successful extensions: 1559
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)