Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31015
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ... 73 1e-13
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 72 4e-13
At1g02930.1 68414.m00260 glutathione S-transferase, putative sim... 45 4e-05
At4g02520.1 68417.m00345 glutathione S-transferase, putative 45 6e-05
At2g02390.2 68415.m00177 glutathione S-transferase zeta 1 (GSTZ1... 44 7e-05
At2g02390.1 68415.m00178 glutathione S-transferase zeta 1 (GSTZ1... 44 7e-05
At2g02930.1 68415.m00241 glutathione S-transferase, putative 44 1e-04
At2g02380.1 68415.m00176 glutathione S-transferase, putative sim... 44 1e-04
At1g02920.1 68414.m00259 glutathione S-transferase, putative sim... 42 4e-04
At2g02390.3 68415.m00179 glutathione S-transferase zeta 1 (GSTZ1... 41 7e-04
At1g02940.1 68414.m00261 glutathione S-transferase, putative sim... 38 0.005
At1g02950.2 68414.m00263 glutathione S-transferase, putative sim... 38 0.008
At1g02950.1 68414.m00262 glutathione S-transferase, putative sim... 38 0.008
At5g44000.1 68418.m05384 glutathione S-transferase C-terminal do... 31 0.56
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-... 31 0.73
At1g16840.2 68414.m02028 expressed protein 30 1.3
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot... 29 2.2
At3g49210.1 68416.m05378 expressed protein 29 3.0
At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta id... 29 3.0
At4g22130.1 68417.m03199 protein kinase family protein contains ... 29 3.9
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 28 5.2
At4g26190.1 68417.m03770 expressed protein 28 5.2
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF... 28 6.8
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 28 6.8
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 27 9.0
At4g24740.1 68417.m03541 protein kinase (AFC2) identical to prot... 27 9.0
At4g03240.1 68417.m00443 frataxin protein-related contains weak ... 27 9.0
>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative similar to elongation factor 1B
gamma GI:3868758 from [Oryza sativa]
Length = 413
Score = 73.3 bits (172), Expect = 1e-13
Identities = 37/77 (48%), Positives = 52/77 (67%)
Frame = +2
Query: 20 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 199
V++TY N A KALIAA+Y+G ++ + +F G TNKS +FLK P GKVP E+ +G
Sbjct: 4 VMHTYKGNKGANKALIAAEYAGVKIEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGP 63
Query: 200 VLLTESNAIAYYVANES 250
+ ESNAIA YV+ ++
Sbjct: 64 IF--ESNAIARYVSRKN 78
Score = 51.2 bits (117), Expect = 6e-07
Identities = 27/78 (34%), Positives = 38/78 (48%)
Frame = +1
Query: 256 GGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGH 435
G L A + QW +S E+ W P +G F+ E A S L L+ L+ H
Sbjct: 85 GSSLIEYAHIEQWIDFSSLEIDANMLKWFAPRMGYAPFSAPAEEAAISALKRGLEALNTH 144
Query: 436 LLTRTFLVTERITLADVI 489
L + TFLV +TLAD++
Sbjct: 145 LASNTFLVGHSVTLADIV 162
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 513 FQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYDPKK 659
F V+ S+ +V+R+F T+ +QP+ V+G A P KK
Sbjct: 171 FATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPVPTKK 219
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 71.7 bits (168), Expect = 4e-13
Identities = 39/74 (52%), Positives = 47/74 (63%)
Frame = +2
Query: 20 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 199
VL+TY N A KALIAA+Y G + V +F G TNK+ FLK P GKVP E+ +G
Sbjct: 4 VLHTYKGNKSAEKALIAAEYVGVQIDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGS 63
Query: 200 VLLTESNAIAYYVA 241
V ESNAIA YV+
Sbjct: 64 VF--ESNAIARYVS 75
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/78 (37%), Positives = 41/78 (52%)
Frame = +1
Query: 256 GGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGH 435
G L A++ QW +S E+ + W P +G M ++ E A S L AL L+ H
Sbjct: 85 GSSLIEYAQIEQWIDFSSLEIYASILRWFGPRMGFMPYSAPAEEGAISTLKRALDALNTH 144
Query: 436 LLTRTFLVTERITLADVI 489
L + T+LV ITLAD+I
Sbjct: 145 LTSNTYLVGHSITLADII 162
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 513 FQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYDPKK 659
F V+ S +V+R+F TV +QP + V+G + A P KK
Sbjct: 171 FATVMTKKFTSEFPHVERYFWTVVNQPNFTKVLGDVKQTEAVPPIASKK 219
>At1g02930.1 68414.m00260 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]
Length = 208
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = +2
Query: 8 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 187
MA ++ +P + + LIA D + + +K E F+ + P GKVPAFE
Sbjct: 1 MAGIKVFGHPASTATRRVLIALHEKNVDFEFVHVELKDGEHKKEPFILRNPFGKVPAFED 60
Query: 188 ADGKVLLTESNAIAYYVANE 247
D K+ ES AI Y+A+E
Sbjct: 61 GDFKIF--ESRAITQYIAHE 78
>At4g02520.1 68417.m00345 glutathione S-transferase, putative
Length = 212
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/79 (34%), Positives = 41/79 (51%)
Frame = +2
Query: 8 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 187
MA ++ +P + + LIA D ++ + +K E FL + P G+VPAFE
Sbjct: 1 MAGIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFE- 59
Query: 188 ADGKVLLTESNAIAYYVAN 244
DG + L ES AI Y+A+
Sbjct: 60 -DGDLKLFESRAITQYIAH 77
>At2g02390.2 68415.m00177 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 191
Score = 44.4 bits (100), Expect = 7e-05
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Frame = +2
Query: 23 LYTYPENFRAYKALIAAQYSGTDVKVAP-NFVFGETNKSEDFLKKFPAGKVPAFESADGK 199
LY+Y + A++ IA G D + P N + G+ S DF K P G VPA DG
Sbjct: 11 LYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDS-DFKKINPMGTVPAL--VDGD 67
Query: 200 VLLTESNAIAYYVANESLPEEIWLPKPVSGSGHHGLTANYCLLPALGSSLTLVSCNSTNR 379
V++ +S AI Y+ +E PE LP+ + + A +L + L
Sbjct: 68 VVINDSFAIIMYL-DEKYPEPPLLPRDLHKRAVN-YQAMSIVLSGIQPHQNLAVIRYIEE 125
Query: 380 MLNVQSLTYW 409
+NV+ T W
Sbjct: 126 KINVEEKTAW 135
>At2g02390.1 68415.m00178 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 221
Score = 44.4 bits (100), Expect = 7e-05
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Frame = +2
Query: 23 LYTYPENFRAYKALIAAQYSGTDVKVAP-NFVFGETNKSEDFLKKFPAGKVPAFESADGK 199
LY+Y + A++ IA G D + P N + G+ S DF K P G VPA DG
Sbjct: 11 LYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDS-DFKKINPMGTVPAL--VDGD 67
Query: 200 VLLTESNAIAYYVANESLPEEIWLPKPVSGSGHHGLTANYCLLPALGSSLTLVSCNSTNR 379
V++ +S AI Y+ +E PE LP+ + + A +L + L
Sbjct: 68 VVINDSFAIIMYL-DEKYPEPPLLPRDLHKRAVN-YQAMSIVLSGIQPHQNLAVIRYIEE 125
Query: 380 MLNVQSLTYW 409
+NV+ T W
Sbjct: 126 KINVEEKTAW 135
>At2g02930.1 68415.m00241 glutathione S-transferase, putative
Length = 212
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/79 (34%), Positives = 41/79 (51%)
Frame = +2
Query: 8 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 187
MA ++ +P + + LIA D ++ + +K E FL + P G+VPAFE
Sbjct: 1 MAGIKVFGHPASTSTRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFE- 59
Query: 188 ADGKVLLTESNAIAYYVAN 244
DG + L ES AI Y+A+
Sbjct: 60 -DGDLKLFESRAITQYIAH 77
>At2g02380.1 68415.m00176 glutathione S-transferase, putative
similar to gi:167970 gb:AAA72320 gb:AY052332
Length = 223
Score = 44.0 bits (99), Expect = 1e-04
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +2
Query: 23 LYTYPENFRAYKALIAAQYSGTDVKVAP-NFVFGETNKSEDFLKKFPAGKVPAFESADGK 199
LY+Y + A++ IA G D + P N + G+ + S DF K P G VPA DG
Sbjct: 14 LYSYWRSSCAHRVRIALTLKGLDYEYIPVNLLKGDQSDS-DFKKINPMGTVPAL--VDGD 70
Query: 200 VLLTESNAIAYYVANESLPEEIWLPKPVSGSGHHGLTANY 319
V++ +S AI Y+ ++ PE LP S +H NY
Sbjct: 71 VVINDSFAIIMYL-DDKYPEPPLLP-----SDYHKRAVNY 104
>At1g02920.1 68414.m00259 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]; supported by cDNA GI:443697.
Length = 209
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/79 (34%), Positives = 39/79 (49%)
Frame = +2
Query: 8 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 187
MA ++ +P + + LIA D + + +K E F+ + P GKVPAFE
Sbjct: 1 MAGIKVFGHPASTATRRVLIALHEKNLDFEFVHIELKDGEHKKEPFIFRNPFGKVPAFE- 59
Query: 188 ADGKVLLTESNAIAYYVAN 244
DG L ES AI Y+A+
Sbjct: 60 -DGDFKLFESRAITQYIAH 77
>At2g02390.3 68415.m00179 glutathione S-transferase zeta 1 (GSTZ1)
(GST18) identical to SP|Q9ZVQ3|GTZ1_ARATH Glutathione
S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1)
(Maleylacetone isomerase) (EC 5.2.1.-) (MAI)
{Arabidopsis thaliana}; contains Pfam profiles PF02798:
Glutathione S-transferase, N-terminal domain and
PF00043:Glutathione S-transferase, C-terminal domain
Length = 228
Score = 41.1 bits (92), Expect = 7e-04
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Frame = +2
Query: 23 LYTYPENFRAYKALIAAQYSGTDVKVAP-NFVFGETNKS------EDFLKKFPAGKVPAF 181
LY+Y + A++ IA G D + P N + G+ S +DF K P G VPA
Sbjct: 11 LYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSVYRFDLQDFKKINPMGTVPAL 70
Query: 182 ESADGKVLLTESNAIAYYVANESLPEEIWLPKPVSGSGHHGLTANYCLLPALGSSLTLVS 361
DG V++ +S AI Y+ +E PE LP+ + + A +L + L
Sbjct: 71 --VDGDVVINDSFAIIMYL-DEKYPEPPLLPRDLHKRAVN-YQAMSIVLSGIQPHQNLAV 126
Query: 362 CNSTNRMLNVQSLTYW 409
+NV+ T W
Sbjct: 127 IRYIEEKINVEEKTAW 142
>At1g02940.1 68414.m00261 glutathione S-transferase, putative
similar to glutathione S-transferase GI:860955 from
[Hyoscyamus muticus]
Length = 256
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 23 LYTYPENFRAYKALIAAQYSGTDVK-VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 199
+Y YP + + L G + N + G+ K FL P G+VP F DG
Sbjct: 41 IYGYPYSTNTRRVLAVLHEKGLSYDPITVNLIAGD-QKKPSFLAINPFGQVPVF--LDGG 97
Query: 200 VLLTESNAIAYYVA 241
+ LTES AI+ Y+A
Sbjct: 98 LKLTESRAISEYIA 111
>At1g02950.2 68414.m00263 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 245
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2
Query: 128 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVA 241
+K+E FL P G+VP FE DG V L ES AI Y+A
Sbjct: 64 HKTEPFLSLNPFGQVPVFE--DGSVKLYESRAITQYIA 99
>At1g02950.1 68414.m00262 glutathione S-transferase, putative
similar to glutathione-S-transferase GI:169887 from
[Silene vulgaris]
Length = 243
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2
Query: 128 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVA 241
+K+E FL P G+VP FE DG V L ES AI Y+A
Sbjct: 62 HKTEPFLSLNPFGQVPVFE--DGSVKLYESRAITQYIA 97
>At5g44000.1 68418.m05384 glutathione S-transferase C-terminal
domain-containing protein contains Pfam domain PF00043:
Glutathione S-transferase, C-terminal domain
Length = 399
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +1
Query: 370 NKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVF 495
+++ + A ++L + L ++ HL + +L ER+TLADV +F
Sbjct: 261 SQEAYDGAVNELFSTLDEIEDHLGSNRYLCGERLTLADVCLF 302
>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
domain-containing protein-related contains weak hit to
Pfam F00627: UBA/TS-N domain; supported by tandem
duplication of ubiquitin-associated (UBA)/TS-N domain
protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
thaliana]
Length = 508
Score = 31.1 bits (67), Expect = 0.73
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Frame = +2
Query: 353 LVSCNSTNRMLNVQSLTYWPP*KYWTDIFSHAPSLLPRES--HLPMSLSSVHCCCFPARA 526
L++ + N N +S + WPP K W D H + E+ +L S + R+
Sbjct: 195 LMASSQVNTQENQESTSVWPPMKTWVDRICHETKVSREEAFYYLEGSKWNFSRAVEACRS 254
Query: 527 RPERPFVADKRSALVPDRRPPAASVGRRRLAHALC 631
+ A + SA P P S+ + + C
Sbjct: 255 KTLPVVSASQESAEAPPNSPEQPSLLKNEWISSFC 289
>At1g16840.2 68414.m02028 expressed protein
Length = 161
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2
Query: 266 WLPKPVSGSGHHGLTANYCLLPALGSSLTLVSCNSTNRMLNVQSLTYWPP*KYWT 430
W+P P SGS HG+ L+ L + LT STN S Y+ YW+
Sbjct: 89 WVPPPGSGSQSHGIAQ---LVVKLANPLTHEESLSTNSSHGWPSSDYFLKGSYWS 140
>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 494
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 59 ALIAAQYSGTDVKVAPNFVFGETNKSE 139
A++ AQY+GT +K V G+ NK++
Sbjct: 342 AILKAQYAGTIIKAKHRIVLGQNNKAD 368
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 262 DLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLL 441
D+ + +W +W + P S L ++ K+ ++R K+ L AAL + G +
Sbjct: 352 DMMAKGSTCRWGNWIGYIVFPFSIGLRDDPLQHLRRAKRIIDRKKNSLEAALTFVAGKFI 411
Query: 442 TRTF 453
+TF
Sbjct: 412 LKTF 415
>At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta
identical to SP|P48006 Elongation factor 1-beta
(EF-1-beta) {Arabidopsis thaliana}
Length = 231
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 409 AALKVLDGHLLTRTFLVTERITLADVIVF 495
A LK LD HLLTR+++ + + D+ VF
Sbjct: 11 AGLKKLDEHLLTRSYITGYQASKDDITVF 39
>At4g22130.1 68417.m03199 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 338
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +2
Query: 47 RAYKALIAAQYSGTDVKVAPNF-----VFGETNKSEDFLKKFPAGKVPAFESADGKVL-L 208
R + A+QY+ + ++VA N + GE + + +FP GK+ A + D L L
Sbjct: 8 RIRSPITASQYTVSSLQVATNSFSQENIIGEGSLGRVYRAEFPNGKIMAIKKIDNAALSL 67
Query: 209 TESNAIAYYVANES 250
E + V+N S
Sbjct: 68 QEEDNFLEAVSNMS 81
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1029
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -3
Query: 615 SRRRPTLAAGGRRSGTNAERLSATNGRSGLARAGKQQQCTEDNDIGKCDSLGNKEGACE 439
S++RP + G T+ +L+ + A + +QC D D+ +G+ G E
Sbjct: 279 SKKRPLSSKDGSAIPTSLLQLNKVKNMNQDANGDENEQCISDGDLDNIVGVGDSSGLKE 337
>At4g26190.1 68417.m03770 expressed protein
Length = 1067
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 588 GGRRSGTNAERLSATNGRSGLARAGKQQQCTEDNDIGKCDSLGNKEGACE 439
GG E+ SAT +SG+ ++GK+++ T+D +I + EG +
Sbjct: 567 GGEDMTIKIEK-SATREKSGVQKSGKRKEMTKDKNIESNQDALDAEGVSD 615
>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
EF-1-beta, putative nearly identical to eEF-1beta
[Arabidopsis thaliana] GI:398606
Length = 231
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 409 AALKVLDGHLLTRTFLVTERITLADVIVF 495
+ LK LD HLLTR+++ + + D+ VF
Sbjct: 11 SGLKKLDEHLLTRSYITGYQASKDDITVF 39
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 618 ASRRRPTLAAGGRRSGTNAERLSATNGR 535
+S R P+ A GRRSGT R+S T G+
Sbjct: 171 SSARHPS-PASGRRSGTPVRRISPTPGK 197
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 461 PRESHLPMSLSSVHCCCF-PARARPERP 541
P LPM + V CCC+ P R R E P
Sbjct: 72 PPPPPLPMFDAEVLCCCYPPTRVRREAP 99
>At4g24740.1 68417.m03541 protein kinase (AFC2) identical to protein
kinase AFC2 [Arabidopsis thaliana] SWISS-PROT:P51567
Length = 427
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = -1
Query: 623 RERADDGRHLRLVGDGQEPTLNVYQRRTDARV*HVLEXXXSVLKTMTSASVILSVTR 453
RE DG ++ +GD P +Y + + VLE K M + ++ V +
Sbjct: 78 REDDKDGHYIFELGDDLTPRYKIYSKMGEGTFGQVLECWDRERKEMVAVKIVRGVKK 134
>At4g03240.1 68417.m00443 frataxin protein-related contains weak
similarity to Frataxin, mitochondrial precursor
(Friedreich's ataxia protein) (Fxn) (Swiss-Prot:Q16595)
[Homo sapiens]
Length = 187
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 197 KVLLTESNAIAYYVANESLPE-EIWLPKPVSG 289
+VL + ++ YV N+ P +IW+ PVSG
Sbjct: 115 EVLTLKLGSLGTYVLNKQTPNRQIWMSSPVSG 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,459,501
Number of Sequences: 28952
Number of extensions: 369484
Number of successful extensions: 1079
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -