Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31014
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 136 1e-32
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 131 3e-31
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 131 3e-31
At3g05140.1 68416.m00558 protein kinase family protein contains ... 29 2.4
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 29 2.4
At4g31260.1 68417.m04437 hypothetical protein 29 3.2
At2g31890.1 68415.m03896 expressed protein 28 4.2
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 27 7.3
At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ... 27 7.3
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 9.6
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 9.6
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 136 bits (328), Expect = 1e-32
Identities = 66/85 (77%), Positives = 76/85 (89%)
Frame = +3
Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IAKIMR RS
Sbjct: 62 KLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPRS 121
Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
+A+ LSG+VKEILGT SVGCTV+G
Sbjct: 122 IAKELSGTVKEILGTCVSVGCTVDG 146
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/61 (68%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 253 V 255
V
Sbjct: 61 V 61
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 131 bits (317), Expect = 3e-31
Identities = 63/85 (74%), Positives = 75/85 (88%)
Frame = +3
Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR RS
Sbjct: 62 KLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRS 121
Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
+A+ LSG+V+EILGT SVGCTV+G
Sbjct: 122 IAKELSGTVREILGTCVSVGCTVDG 146
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/61 (68%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 253 V 255
V
Sbjct: 61 V 61
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 131 bits (317), Expect = 3e-31
Identities = 63/85 (74%), Positives = 75/85 (88%)
Frame = +3
Query: 255 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 434
+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR RS
Sbjct: 62 KLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRS 121
Query: 435 MARYLSGSVKEILGTAQSVGCTVEG 509
+A+ LSG+V+EILGT SVGCTV+G
Sbjct: 122 IAKELSGTVREILGTCVSVGCTVDG 146
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/61 (68%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 252
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 253 V 255
V
Sbjct: 61 V 61
>At3g05140.1 68416.m00558 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 460
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 477 TAQSVGCTVEGGRHMILLMTSTAEL*PLMN 566
TA+ +GC +EGG H++ ++ L L++
Sbjct: 200 TAKFIGCCIEGGMHLVFRLSPLGSLGSLLH 229
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -3
Query: 418 IFAIPITSSREMLPLCLIFFCFL 350
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At4g31260.1 68417.m04437 hypothetical protein
Length = 63
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 579 IRNIYSSMVKAPLLMSSIRSCGGL 508
IR++Y VK+ + + IRSCGG+
Sbjct: 28 IRSLYPDKVKSEIPIQDIRSCGGV 51
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 333 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 440
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 454 PERYRAIDLFLMIFAIPITSSREMLPLCLIFFCFLRSRGGSLRA 323
P R+ ++ + I + ++ +L LC+++ C+ + R S+RA
Sbjct: 645 PRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRA 688
>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
ADP, ATP translocase 1 / adenine nucleotide translocase
1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
carrier protein 1, chloroplast precursor (ADP/ATP
translocase 1) (Adenine nucleotide translocase 1)
{Arabidopsis thaliana}
Length = 624
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 418 IFAIPITSSREMLPLCLIFFCFL 350
IF + + + ++++PL L+FFC L
Sbjct: 105 IFGVEVATLKKIIPLGLMFFCIL 127
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 133 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 231
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 133 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 231
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,646,942
Number of Sequences: 28952
Number of extensions: 290953
Number of successful extensions: 815
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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