Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31008
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.2  
SPBC409.21 |sec66||ER protein translocation subcomplex subunit S...    26   4.3  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.6  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   9.9  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   9.9  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   9.9  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 480 AASFTIIVRSRHSRHPPRAEFGTRFTKVLGLSDK 581
           A SF  IV+ R S  P    F T+F  +L LSDK
Sbjct: 262 ATSFWDIVKHRPSS-PEEKPFLTQFQSILNLSDK 294


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 369  EEWFLIAVPVELKRFLVPYEVSRYHGVIMGKID 467
            E W  +++P   KR L+P+  S+YH   + KID
Sbjct: 1192 EHW--MSLPDLSKRVLIPFLTSKYHLTPIPKID 1222


>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
           Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 498 IVRSRHSRHPPRAEFGTRFTKVLGLSDKIHYVADNIPIKAIDYLNKANYTEVI 656
           I ++ +S  P   +F  +    +  ++KIH + DNIP K ID +++   TE I
Sbjct: 121 IAKTANSLQPGWNQFIFQTCNEIIENEKIHSIIDNIP-KDIDSISQRWQTEKI 172


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 232  PELYRKGINDLPIRWQ 185
            PELY+KGIN+    W+
Sbjct: 1366 PELYQKGINNEAFNWR 1381


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 288 TFYHVENFTNPEKNRIPLEHGFANKEGEEWFLIAVPVEL 404
           T  H  NF N    +I LE    N +GE    ++ P+EL
Sbjct: 132 THSHAINFNNMSTMKIVLERWIVNLDGE---ALSTPLEL 167


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 542 EFGPRRMSTVPTPNNDS 492
           +FG +R STVPT  N S
Sbjct: 306 DFGDKRASTVPTSENTS 322


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = -1

Query: 205 DLPIRWQQ----CIDNNGRYFD*INMF 137
           D+P++  +    C D +G+YFD +N+F
Sbjct: 203 DIPVKGDETLVICGDTHGQYFDLLNIF 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,124
Number of Sequences: 5004
Number of extensions: 60949
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)