Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31008
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065...    31   0.83 
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864...    29   4.4  
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167           28   7.7  
04_04_0339 - 24513699-24516827                                         28   7.7  

>12_02_0995 +
           25104303-25104486,25105164-25105275,25106466-25106554,
           25106635-25106703,25106784-25106913,25107073-25107231,
           25107364-25107736,25108070-25108182,25108429-25108624,
           25108855-25109288,25109360-25109495,25109668-25111086
          Length = 1137

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 465 RSSPLLLHDNAKPHTARETVLILQELQLETIPHPP 361
           RS+P++L D      A + +L+L+   L+T+PH P
Sbjct: 324 RSTPMVLVDQDMFVLADDVILLLERAALDTLPHQP 358


>08_02_0290 +
           15383473-15383669,15385057-15385267,15386389-15386440,
           15386545-15386863,15387022-15387121,15387391-15387657,
           15387780-15387857,15387943-15388032,15388119-15388168,
           15388267-15388366,15388777-15388875,15389023-15389136,
           15389238-15389412,15389726-15390132,15390565-15390639,
           15391412-15391438
          Length = 786

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 360 YSRNRAPTEYDFFRGL*NFLRDKKFSSQEAVQ 265
           +SRN  P +++ +  L  FL+ +KF +++A+Q
Sbjct: 243 FSRNLLPDKHNDYHMLLRFLKARKFDTEKAIQ 274


>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
          Length = 422

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 651 LRCSWPCSNSQSL*SEYCRPRSGFCLIAL 565
           LRCS PCS S +    Y   R+G+  +AL
Sbjct: 225 LRCSSPCSPSTAAAPAYTTARTGYSWMAL 253


>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 80  KYEIADLYVLKKLNLVFFIEHIYLIKISTIVIYTLLPSN 196
           K E+A  +VL + +LVF+ + + L   +T V Y  LPSN
Sbjct: 365 KTEVAWQHVLSRFDLVFYADPLLL--DATYVSYQQLPSN 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,975
Number of Sequences: 37544
Number of extensions: 355946
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)