Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31008
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_52739| Best HMM Match : GCV_H (HMM E-Value=2)                       28   7.9  
SB_17122| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 536 RIRHQVHQSSRAIRQNPLRGRQYSDQSD*LFEQGQL 643
           R+    H S+ AI+QNP+    YS+  +   E+GQL
Sbjct: 96  RLDRSAHFSTLAIKQNPMLAEAYSNLGNVFKERGQL 131


>SB_52739| Best HMM Match : GCV_H (HMM E-Value=2)
          Length = 561

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 161 STIVIYTLLPSNRKVIYTFAI*LWGFTLYKLLKAF 265
           S  V+++ +P N K  Y   I  +G  +YK+L+ +
Sbjct: 262 SVFVVFSAIPKNEKTWYYVEISPYGVGIYKVLQVY 296


>SB_17122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 546 TRFTKVLGLSDKIHYVADNIPIKAIDYLNKANYTEVIER 662
           T+ TK LG +  + YV+  +P+  IDYL+ AN   +  R
Sbjct: 256 TKITKTLG-AVFLGYVSCWMPVSIIDYLDAANGKPIYHR 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,975,722
Number of Sequences: 59808
Number of extensions: 438128
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)