Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31008
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    81   5e-16
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    72   3e-13
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    72   3e-13
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    72   3e-13
U13071-3|AAA20673.1|  286|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    30   1.7  
Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 44/105 (41%), Positives = 60/105 (57%)
 Frame = -2

Query: 528 ADVYCADSEQ***NLQPRFMNRSSPLLLHDNAKPHTARETVLILQELQLETIPHPPYSRN 349
           AD+YC   E+     Q      S  LLLHDNA+PHTA +T   LQ L +E +PHPPYS +
Sbjct: 185 ADLYCIQLEKVVHAHQLHRPRGSKLLLLHDNARPHTALKTRQKLQTLGIEVLPHPPYSPD 244

Query: 348 RAPTEYDFFRGL*NFLRDKKFSSQEAVQNAFNSL*SVNPQSYIAK 214
            APT+Y  FR L N L  +KF  ++AV+   +   +   Q + A+
Sbjct: 245 LAPTDYHLFRSLQNHLAGQKFHDRKAVETWLDDFFASKSQEFYAE 289



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = -1

Query: 250 FVECKSPELYRKGINDLPIRWQQCIDNNGRY 158
           F   KS E Y +GI  LP+RWQ+ ID NG Y
Sbjct: 278 FFASKSQEFYAEGIAQLPLRWQEVIDTNGEY 308


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = -2

Query: 528 ADVYCADSEQ***NLQPRFMNRSSPL-LLHDNAKPHTARETVLILQELQLETIPHPPYSR 352
           AD YCA  ++    +  +   +   L  LHDNA+PH A++T   LQ+L    +PHPPYS 
Sbjct: 216 ADYYCAQLDR----VAEKTNGKYEKLYFLHDNARPHVAKKTFQKLQDLGWTVLPHPPYSP 271

Query: 351 NRAPTEYDFFRGL*NFLRDKKFSSQEAVQNAFNSL*SVNPQSYIAK 214
           + APT+Y  F  L +++RDK+F  +E ++   ++  S     + ++
Sbjct: 272 DLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSR 317



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 250 FVECKSPELYRKGINDLPIRWQQCIDNNGRY 158
           F   +SP+ + +GI  LP +WQQ +D NG Y
Sbjct: 306 FFSSRSPDFFSRGIMMLPSKWQQVVDTNGEY 336


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = -2

Query: 528 ADVYCADSEQ***NLQPRFMNRSSPL-LLHDNAKPHTARETVLILQELQLETIPHPPYSR 352
           AD YCA  ++    +  +   +   L  LHDNA+PH A++T   LQ+L    +PHPPYS 
Sbjct: 191 ADYYCAQLDR----VAEKTNGKYEKLYFLHDNARPHVAKKTFQKLQDLGWTVLPHPPYSP 246

Query: 351 NRAPTEYDFFRGL*NFLRDKKFSSQEAVQNAFNSL*SVNPQSYIAK 214
           + APT+Y  F  L +++RDK+F  +E ++   ++  S     + ++
Sbjct: 247 DLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSR 292



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 250 FVECKSPELYRKGINDLPIRWQQCIDNNG 164
           F   +SP+ + +GI  LP +WQQ +D NG
Sbjct: 281 FFSSRSPDFFSRGIMMLPSKWQQVVDTNG 309


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = -2

Query: 528 ADVYCADSEQ***NLQPRFMNRSSPL-LLHDNAKPHTARETVLILQELQLETIPHPPYSR 352
           AD YCA  ++    +  +   +   L  LHDNA+PH A++T   LQ+L    +PHPPYS 
Sbjct: 216 ADYYCAQLDR----VAEKTNGKYEKLYFLHDNARPHVAKKTFQKLQDLGWTVLPHPPYSP 271

Query: 351 NRAPTEYDFFRGL*NFLRDKKFSSQEAVQNAFNSL*SVNPQSYIAK 214
           + APT+Y  F  L +++RDK+F  +E ++   ++  S     + ++
Sbjct: 272 DLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSR 317



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 250 FVECKSPELYRKGINDLPIRWQQCIDNN 167
           F   +SP+ + +GI  LP +WQQ +D N
Sbjct: 306 FFSSRSPDFFSRGIMMLPSKWQQVVDTN 333


>U13071-3|AAA20673.1|  286|Caenorhabditis elegans Hypothetical
           protein T22F7.4 protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -2

Query: 441 DNAKPHTARETVLILQELQLETIPHPPYSRNRAPTEYDFFRGL*NFLRDKKFSSQEAVQN 262
           +NA P+  ++ +  L       + +PPYS+  AP+EY  F  +   L  + F++  + + 
Sbjct: 10  NNACPYGLKQVLQELARRGWMVLLYPPYSQGTAPSEYWSFSDVARVLGGRTFNTHGSFKM 69

Query: 261 A 259
           A
Sbjct: 70  A 70


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 118 KFGFFH*TYLFNQNIY-HCYLYIA 186
           KFGFF+  Y++   IY H YLYIA
Sbjct: 75  KFGFFNDFYIYLDAIYAHIYLYIA 98


>Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical
           protein F49E12.4 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 489 NLQPRFMNRSSPLLLHDNAKPHTARETVLI 400
           N+ P      SP+LL +N KP T  E VL+
Sbjct: 89  NVDPVTCELCSPMLLQENWKPETTMEDVLL 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,126,184
Number of Sequences: 27780
Number of extensions: 343369
Number of successful extensions: 843
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)