Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31008
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    67   2e-13
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          44   2e-06
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          30   0.017
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 66.9 bits (156), Expect = 2e-13
 Identities = 30/74 (40%), Positives = 45/74 (60%)
 Frame = -2

Query: 483 QPRFMNRSSPLLLHDNAKPHTARETVLILQELQLETIPHPPYSRNRAPTEYDFFRGL*NF 304
           +P   NR   +  HDNA+PHT+  T   L EL  + +PHPPYS + AP++Y  FR L N 
Sbjct: 231 RPELTNRKGVVFHHDNARPHTSLVTRQKLLELGWDVLPHPPYSPDLAPSDYFLFRSLQNS 290

Query: 303 LRDKKFSSQEAVQN 262
           L  K F++ + +++
Sbjct: 291 LNGKNFNNDDDIKS 304



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 253 QFVECKSPELYRKGINDLPIRWQQCIDNNGRY 158
           QF   K+ + Y +GI  LP RWQ+ ID NG++
Sbjct: 308 QFFANKNQKFYERGIMMLPERWQKVIDQNGQH 339


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = -2

Query: 483 QPRFMNRSSPLLLHDNAKPHTARETVLILQELQLETIPHPP 361
           +P   NR S +  HDNA+PHT+  T   L EL  + +PHPP
Sbjct: 109 RPELTNRKSVVFHHDNARPHTSLVTRQKLLELGWDVLPHPP 149


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 468 NRSSPLLLHDNAKPHTARETVLILQELQLETIPH 367
           NR   +  HD+A+PHT   T   L EL  + +PH
Sbjct: 115 NRKGVVFHHDDARPHTYLVTRQKLLELGWDVLPH 148


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 467 FMNRGCKFYYHCSESAQ*TSASGRI 541
           F +RG K YY+       T+A GR+
Sbjct: 467 FADRGMKVYYYFFTQRTSTNAMGRV 491


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 455 HYYSMITRNLIRHEK 411
           +YYS I  +++ HEK
Sbjct: 229 YYYSQIVSHVVNHEK 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,538
Number of Sequences: 438
Number of extensions: 4397
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)